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[r] Release 0.1.19 #621

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Merged
aaronwolen merged 6 commits into from
Dec 19, 2022
Merged

[r] Release 0.1.19 #621

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a57ab74
Update setup-r gha to v2
aaronwolen Dec 19, 2022
ca0f234
Bump r-package to 0.1.19
aaronwolen Dec 19, 2022
deaccd9
Update news
aaronwolen Dec 19, 2022
9bf705a
Typo in news
aaronwolen Dec 19, 2022
bd81b0e
Update checkout gha to v3
aaronwolen Dec 19, 2022
0673dc5
Fix news item
aaronwolen Dec 19, 2022
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4 changes: 2 additions & 2 deletions .github/workflows/pkgdown.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ jobs:
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3

- name: Install libgeos on Linux
if: runner.os == 'Linux'
Expand All @@ -26,7 +26,7 @@ jobs:
with:
working-directory: "apis/r"

- uses: r-lib/actions/setup-r@v1
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true
working-directory: "apis/r"
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4 changes: 2 additions & 2 deletions .github/workflows/r-cmd-check.yaml
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Expand Up @@ -31,15 +31,15 @@ jobs:
_R_CHECK_FORCE_SUGGESTS_: false

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3

- name: Install libgeos on Linux
if: runner.os == 'Linux'
run: sudo ./tools/ci/install-linux-dependencies.sh

- uses: r-lib/actions/setup-pandoc@v1

- uses: r-lib/actions/setup-r@v1
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
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2 changes: 1 addition & 1 deletion apis/r/DESCRIPTION
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Expand Up @@ -7,7 +7,7 @@ Description: Interface for working with 'TileDB'-based Stack of Matrices,
from and export to in-memory formats used by popular toolchains like
'Seurat', 'Bioconductor', and even 'AnnData' using the companion Python
package.
Version: 0.1.16.9001
Version: 0.1.19
Authors@R: c(
person(given = "Aaron",
family = "Wolen",
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15 changes: 13 additions & 2 deletions apis/r/NEWS.md
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@@ -1,11 +1,22 @@
# tiledbsoma (development version)
# tiledbsoma 0.1.19

## Changes

- Updated `setup-r` GitHub Action to v2 and `checkout` to v3

# tiledbsoma 0.1.18

## Features

- The `AnnotationMatrix`'s `to_matrix()` method now supports batched reads via the `batch_mode` argument. This functionality can also be leveraged from `SOMA`'s `get_seurat_dimreductions_list()` and `get_seurat_dimreduction()` methods.

## Changes

- Decreased capacity of `AssayMatrix` arrays from 100,000 to 1,000 to improve remote-read performance (#543)

## Fixes
* Don't use default assay name when recreating a `Seurat` object (thanks @dan11mcguire)

- Don't use default assay name when recreating a `Seurat` object (thanks @dan11mcguire)

# tiledbsoma 0.1.12

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