Update h5py to 3.16.0

[jan-janssen]

Summary by CodeRabbit

• Chores
  • Updated the h5py dependency to 3.16.0 across all development, CI, and environment configurations (including optional dependency groups). No other dependencies or configuration entries were changed. Estimated review effort: low.

[coderabbitai]

No actionable comments were generated in the recent review. 🎉

ℹ️ Recent review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 165f4289-b392-44f1-8be4-453c9ec41580

📥 Commits

Reviewing files that changed from the base of the PR and between b088457 and fd3e3e4.

📒 Files selected for processing (1)

• pyproject.toml

✅ Files skipped from review due to trivial changes (1)

• pyproject.toml

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📝 Walkthrough

Walkthrough

This PR bumps the pinned h5py version from 3.15.1 to 3.16.0 across CI and project environment files (7 files total). No other dependencies or configurations were changed.

Changes

Cohort / File(s)	Summary
CI Environment Files ./.ci_support/environment-docs.yml, ./.ci_support/environment-integration.yml, ./.ci_support/environment-mpich.yml, ./.ci_support/environment-openmpi.yml, ./.ci_support/environment-win.yml	Updated h5py pin from 3.15.1 → 3.16.0 in all CI environment YAMLs.
Binder & Project Config binder/environment.yml, pyproject.toml	Updated h5py pin from 3.15.1 → 3.16.0 in binder environment and optional dependency groups (cache, cluster, all) in pyproject.toml.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~4 minutes

Possibly related PRs

• Update h5py to 3.15.1 #852: Previous h5py pin updates across CI and project environment files (related dependency bumps).
• Update integration test environment #871: Edits to .ci_support/environment-integration.yml affecting the same h5py pin.
• Update h5py to 3.15.0 #843: Earlier PR updating h5py version pins in CI and pyproject files.

Poem

🐰 Soft paws tap a patch of light,

H5py nudged up, comfy and bright.
Seven nests now hum in tune,
A little hop beneath the moon.
Crunchy carrots, version new—hooray!

🚥 Pre-merge checks | ✅ 3

✅ Passed checks (3 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title 'Update h5py to 3.16.0' directly and accurately summarizes the main change: upgrading h5py across multiple configuration files from version 3.15.1 to 3.16.0.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing Touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch h5py

---

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[coderabbitai]

Caution

Some comments are outside the diff and can’t be posted inline due to platform limitations.

⚠️ Outside diff range comments (1)

pyproject.toml (1)

43-43: ⚠️ Potential issue | 🟠 Major

Inconsistent h5py version: Update the cache optional dependency group.

The cache optional dependency group still specifies h5py==3.15.1, while the cluster (Line 56) and all (Line 64) groups have been updated to h5py==3.16.0. This inconsistency could lead to version conflicts when users install different combinations of optional dependencies.

🔧 Proposed fix to align versions

-cache = ["h5py==3.15.1"]
+cache = ["h5py==3.16.0"]

🤖 Prompt for AI Agents

Verify each finding against the current code and only fix it if needed.

In `@pyproject.toml` at line 43, Update the cache optional-dependency entry that
currently pins h5py==3.15.1 to h5py==3.16.0 so it matches the cluster and all
groups; locate the cache group in pyproject.toml where the line contains cache =
["h5py==3.15.1"] and change the version string to "h5py==3.16.0" to avoid
inconsistent dependency versions.

🤖 Prompt for all review comments with AI agents

Verify each finding against the current code and only fix it if needed.

Outside diff comments:
In `@pyproject.toml`:
- Line 43: Update the cache optional-dependency entry that currently pins
h5py==3.15.1 to h5py==3.16.0 so it matches the cluster and all groups; locate
the cache group in pyproject.toml where the line contains cache =
["h5py==3.15.1"] and change the version string to "h5py==3.16.0" to avoid
inconsistent dependency versions.

---

ℹ️ Review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: ed3f2111-9326-483c-a718-281ffc5f8eb9

📥 Commits

Reviewing files that changed from the base of the PR and between 837f48c and b088457.

📒 Files selected for processing (7)

• .ci_support/environment-docs.yml
• .ci_support/environment-integration.yml
• .ci_support/environment-mpich.yml
• .ci_support/environment-openmpi.yml
• .ci_support/environment-win.yml
• binder/environment.yml
• pyproject.toml

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.14%. Comparing base (837f48c) to head (fd3e3e4).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #957   +/-   ##
=======================================
  Coverage   94.14%   94.14%           
=======================================
  Files          39       39           
  Lines        2083     2083           
=======================================
  Hits         1961     1961           
  Misses        122      122           

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