Repositories list

• readdy

  Public

  readdy/readdy’s past year of commit activity
  Python / C++ based particle reaction-diffusion simulator

  pythoncplusplussimulation+ 2

  pythoncplusplussimulationparticlesreaction-diffusion

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •1313 forks•6161 stars•1717 issues•00 pull requests•Updated Mar 29, 2026Mar 29, 2026

• readdy_learn

  Public
  learn reactions from data

  Jupyter Notebook

  •

  GNU Lesser General Public License v3.0

  •33 forks•99 stars•00 issues•00 pull requests•Updated Oct 22, 2024Oct 22, 2024

• readdy.github.io

  Public
  ReaDDy documentation

  HTML

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 14, 2021Oct 14, 2021

• readdy_documentation

  Public
  Jekyll source for documentation

  SCSS

  •22 forks•33 stars•00 issues•00 pull requests•Updated Oct 14, 2021Oct 14, 2021

• graph

  Public
  Small C++ header-only library containing a graph data structure with flexible vertices

  C++

  •

  MIT License

  •00 forks•44 stars•00 issues•00 pull requests•Updated Sep 19, 2021Sep 19, 2021

• h5rd

  Public
  lightweight hdf5 wrapper

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•44 stars•00 issues•00 pull requests•Updated Sep 2, 2021Sep 2, 2021

• readdyviewer

  Public

  readdy/readdyviewer’s past year of commit activity
  C++

  •

  GNU Lesser General Public License v3.0

  •00 forks•33 stars•00 issues•00 pull requests•Updated Aug 25, 2021Aug 25, 2021

• readdy_tutorials

  Public

  readdy/readdy_tutorials’s past year of commit activity
  Example notebooks to demonstrate the usage of readdy

  Jupyter Notebook

  •11 fork•22 stars•00 issues•00 pull requests•Updated Dec 11, 2020Dec 11, 2020

• custom-integrator-example

  Public
  Demonstrate how to build a custom integrator for ReaDDy

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 15, 2019Feb 15, 2019

• readdy2_publication_data

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Aug 1, 2018Aug 1, 2018

• readdy_java

  Public
  This library allows to do particle-based reaction-diffusion simulations.

  Java

  •33 forks•1111 stars•22 issues•00 pull requests•Updated Nov 27, 2014Nov 27, 2014

• readdy-sim-StarterKit

  Public
  This starter kit contains templates and necessary binaries to start simulating right away.

  Shell

  •11 fork•33 stars•00 issues•00 pull requests•Updated Aug 22, 2014Aug 22, 2014

• readdy-input-topology-generator

  Public
  The readdy-input-topology-generator (Topology Generator) creates input topology files for particles and groups, given a file how many particle and how many grou…

  Java

  •11 fork•22 stars•00 issues•00 pull requests•Updated Aug 21, 2014Aug 21, 2014

• readdy-VMD-visualizer

  Public
  This tool parses ReaDDy output trajectories and creates an VMD readable output and a VMD .tcl script to visualize it.

  Java

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 30, 2014Jul 30, 2014