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    • readdy

      Public
      Python / C++ based particle reaction-diffusion simulator
      C++
      BSD 3-Clause "New" or "Revised" License
      1361170Updated Mar 29, 2026Mar 29, 2026
    • learn reactions from data
      Jupyter Notebook
      GNU Lesser General Public License v3.0
      3900Updated Oct 22, 2024Oct 22, 2024
    • ReaDDy documentation
      HTML
      Other
      0100Updated Oct 14, 2021Oct 14, 2021
    • Jekyll source for documentation
      SCSS
      2300Updated Oct 14, 2021Oct 14, 2021
    • graph

      Public
      Small C++ header-only library containing a graph data structure with flexible vertices
      C++
      MIT License
      0400Updated Sep 19, 2021Sep 19, 2021
    • h5rd

      Public
      lightweight hdf5 wrapper
      C++
      BSD 3-Clause "New" or "Revised" License
      0400Updated Sep 2, 2021Sep 2, 2021
    • readdyviewer

      Public
      C++
      GNU Lesser General Public License v3.0
      0300Updated Aug 25, 2021Aug 25, 2021
    • readdy_tutorials

      Public
      Example notebooks to demonstrate the usage of readdy
      Jupyter Notebook
      1200Updated Dec 11, 2020Dec 11, 2020
    • Demonstrate how to build a custom integrator for ReaDDy
      Python
      0000Updated Feb 15, 2019Feb 15, 2019
    • 0000Updated Aug 1, 2018Aug 1, 2018
    • This library allows to do particle-based reaction-diffusion simulations.
      Java
      31120Updated Nov 27, 2014Nov 27, 2014
    • This starter kit contains templates and necessary binaries to start simulating right away.
      Shell
      1300Updated Aug 22, 2014Aug 22, 2014
    • The readdy-input-topology-generator (Topology Generator) creates input topology files for particles and groups, given a file how many particle and how many grou…
      Java
      1200Updated Aug 21, 2014Aug 21, 2014
    • This tool parses ReaDDy output trajectories and creates an VMD readable output and a VMD .tcl script to visualize it.
      Java
      0100Updated Jul 30, 2014Jul 30, 2014
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