PDBe EMBL-EBI
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48 repositories
PDBe-MCP-Servers
PublicPDBe MCP Servers integrate Protein Data Bank Europe resources with LLMs via Model Context Protocol. Provides seamless access to protein structure data through A…ecifp
Publicpdbe-api-specifications
Publicmmcif-metadata-import
Publicmmcif-validator
PublicReal-time VSCode extension and standalone Python script for validating mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary.mmcif-gen
PublicThis application is designed to create mmcif files from facilities data.heatmap-component
Publicpdb-images
PublicGenerates images from mmCIF/BCIF filesPDBe-Pipelines
Public- Clusters protein chains based on CA distance difference
ccdutils
PublicA set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKitpdbe-api-training
PublicInteractive Python notebooks for PDBe API trainingInvestigationCIF
PublicDocumentation for the mmcif Investigation dictionarypdbe-notebooks
Publicsurface-calculator
PublicIUCr-annotation-pipeline
Publicafdb-notebooks
Publicrellig
PublicIdentifies relevant ligands in the PDBligand-env
PublicPublic repository of the PDBe ligand environment componentpdb-topology-viewer
Publicpdb-rna-viewer
PublicThe PDB RNA viewer depicts the secondary structure of a RNA in a 2D representationpdbe-rna-tools
Publicprotvista-pdb
Publicsurface-calculator-x
PublicBioSolr
Publicarpeggio
PublicCalculation of interatomic interactions in molecular structurespdbecif
PublicA lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"pdb-sequence-viewer
Publicpdb-redo
Public
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