Issues · fg-labs/divref-wf · GitHub

Labels Milestones New issue

Add tests for `compute_variation_ratios`

#26

· ameynert opened

on Apr 16, 2026

Add complete docstrings for all functions

#25

· ameynert opened

on Apr 16, 2026

Add tests for `compute_haplotype_statistics`

#24

· ameynert opened

on Apr 16, 2026

Use `fgmetric` to write TSV/CSV output files

#23

· ameynert opened

on Apr 16, 2026

Use `Path` instead of aliased `HailPath` for all input/output files that are not expected to be GCS hosted

#22

· ameynert opened

on Apr 16, 2026

Factor out nested functions in `compute_haplotypes.py` and add unit tests

#21

· ameynert opened

on Apr 16, 2026

Add type aliases/hints instead of using `Any` for Hail variables

#20

· ameynert opened

on Apr 16, 2026

Extract test data generation steps documented in `divref/tests/data/README.md` into a Snakemake workflow

#19

· ameynert opened

on Apr 16, 2026