Cli cleanup#65

Draft

jthorton wants to merge 5 commits intocole-group:masterfrom

jthorton:cli-cleanup

Commits on Jan 17, 2024

fix settings file creation
jthorton
committed

Commits on Jan 18, 2024

Commits on Feb 7, 2024

add a report generation cli point
jthorton
committed

Commits on Feb 8, 2024

add a method to detect bad geometries
jthorton
committed