Skip to content
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
29 changes: 13 additions & 16 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -244,22 +244,19 @@ Check crates/capi/ggcat-cpp-api/example for usage examples.

If you use GGCAT in your research, please cite the following article:

### [GGCAT](https://doi.org/10.1101/2022.10.24.513174)
### [GGCAT](https://doi.org/10.1101/gr.277615.122)
> _Extremely-fast construction and querying of compacted and colored de Bruijn graphs with GGCAT_
> Andrea Cracco, Alexandru I. Tomescu
> **Genome Research** 33, 1198--1207 (2023), DOI: [10.1101/gr.277615.122](https://doi.org/10.1101/gr.277615.122)

> Extremely-fast construction and querying of compacted and colored de Bruijn graphs with GGCAT
> Andrea Cracco, Alexandru I. Tomescu
> Genome Research gr.277615.122; doi: https://doi.org/10.1101/gr.277615.122

If you use a matchtigs/eulertigs output, please also cite the following articles:
If you use a matchtigs/eulertigs output, please also cite the following articles:

#### [Matchtigs](https://doi.org/10.1101/2021.12.15.472871)

> Matchtigs: minimum plain text representation of kmer sets
> Sebastian Schmidt, Shahbaz Khan, Jarno Alanko, Alexandru I. Tomescu
> bioRxiv 2021.12.15.472871; doi: https://doi.org/10.1101/2021.12.15.472871

#### [Eulertigs](https://doi.org/10.4230/LIPIcs.WABI.2022.2)

> Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time
> Sebastian Schmidt and Jarno N. Alanko
> WABI 2022. [10.4230/LIPIcs.WABI.2022.2](https://doi.org/10.4230/LIPIcs.WABI.2022.2).
> _Matchtigs: minimum plain text representation of kmer sets_
> Sebastian Schmidt, Shahbaz Khan, Jarno N. Alanko, Giulio E. Pibiri & Alexandru I. Tomescu
> **Genome Biology**, Volume 24, article number 136 (2023), DOI: [10.1101/2021.12.15.472871](https://doi.org/10.1101/2021.12.15.472871)

#### [Eulertigs](https://doi.org/10.1186/s13015-023-00227-1)
> _Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time_
> Sebastian Schmidt and Jarno N. Alanko
> **Algorithms for Molecular Biology**, Volume 18, article number 5 (2023), DOI: [10.1186/s13015-023-00227-1](https://doi.org/10.1186/s13015-023-00227-1).
Loading