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@YosefLab

Yosef Lab

Department of Systems Immunology, Weizmann Institute of Science

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  1. VISION VISION Public

    Signature Analysis and Visualization for Single-Cell RNA-seq

    R 176 33

  2. Cassiopeia Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    Python 99 29

  3. Compass Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    Python 124 33

  4. Hotspot Hotspot Public

    Python 146 17

  5. epitome epitome Public

    Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

    Python 10 5

  6. popV popV Public

    Python 92 20

Repositories

Showing 10 of 69 repositories
  • scib-metrics Public

    Accelerated, Python-only, single-cell integration benchmarking metrics

    YosefLab/scib-metrics’s past year of commit activity
    Python 89 BSD-3-Clause 20 7 3 Updated Mar 31, 2026
  • destvi_utils Public

    Utilities for downstream analysis of destVI

    YosefLab/destvi_utils’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 1 Updated Mar 30, 2026
  • treedata Public

    anndata with trees

    YosefLab/treedata’s past year of commit activity
    Python 8 BSD-3-Clause 4 0 1 Updated Mar 30, 2026
  • popV Public
    YosefLab/popV’s past year of commit activity
    Python 92 MIT 20 3 2 Updated Mar 30, 2026
  • Harreman Public

    Harreman infers metabolic exchanges in tissues using spatial transcriptomics.

    YosefLab/Harreman’s past year of commit activity
    Python 7 BSD-3-Clause 1 0 0 Updated Mar 30, 2026
  • visionpy Public

    Functional interpretation of single cell similarity maps

    YosefLab/visionpy’s past year of commit activity
    JavaScript 5 BSD-3-Clause 4 0 3 Updated Mar 30, 2026
  • pycea Public

    scverse lineage tracing analysis toolkit

    YosefLab/pycea’s past year of commit activity
    Python 4 BSD-3-Clause 2 0 0 Updated Mar 30, 2026
  • yoseflab.github.io Public
    YosefLab/yoseflab.github.io’s past year of commit activity
    JavaScript 3 MIT 9 0 0 Updated Mar 30, 2026
  • Hotspot Public
    YosefLab/Hotspot’s past year of commit activity
    Python 146 MIT 17 20 0 Updated Mar 20, 2026
  • mrvi_archive Public

    Multi-resolution Variational Inference

    YosefLab/mrvi_archive’s past year of commit activity
    Python 23 BSD-3-Clause 8 2 1 Updated Mar 16, 2026
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