Docker build

[Tishwings]

Hey, I prepared a new workflow for building the docker image.

I tested it and it created the image https://github.com/TRON-Bioinformatics/splice2neo/pkgs/container/splice2neo with the current release v0.6.13 as tag. Can be pulled with the command:

docker pull ghcr.io/tron-bioinformatics/splice2neo:v0.6.13

After testing I switched the trigger to release. The pipeline should now only run when a new release was published and the tag should always be the release tag.

@johausmann
❓I edited the syntax in the Dockerfile since docker buildx in github doesn't recognize the "docker://" prefix. Will this still work for your local build? When not, we need a second Dockerfile.
❓ Is "splice2neo" as name for the image ok or would something else be more suitable?

[johausmann]

I edited the syntax in the Dockerfile since docker buildx in github doesn't recognize the "docker://" prefix. Will this still work for your local build? When not, we need a second Dockerfile.

I think this should not be a problem. If I remember correctly, we required this for the old docker version on our system.

Is "splice2neo" as name for the image ok or would something else be more suitable?

Name should be fine

[johausmann]

@ibn-salem, can you please review the R-CMD check? I think this comes from the transition of the txdb function into a new R package

[ibn-salem]

makeTxDbFromGFF() has moved from GenomicFeatures to the txdbmaker package,
  and is formally defunct in GenomicFeatures >= 1.61.1. Please call
  txdbmaker::makeTxDbFromGFF() to get rid of this error.

Yes, this seems to have changed in the current BioC devel version.

[ibn-salem]

The makeTxDbFromGFF() issue has been fixed in the dev branch and these changes are now merged into this.

[ibn-salem]

version is now 0.6.14