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Bump server to 5.6.11 and incl ZarrReader #420

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dominikl wants to merge 2 commits into from
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Bump server to 5.6.11 and incl ZarrReader #420

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c3b470c
Revert "Revert OMERO.server upgrade for prod120"
dominikl Apr 11, 2024
2bffec7
Update omero-server to latest version
dominikl May 13, 2024
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28 changes: 1 addition & 27 deletions ansible/group_vars/omero-hosts.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -6,9 +6,7 @@
######################################################################
# Shared variables

# Force a downgrade from 5.6.1
# https://github.com/ome/omero-server/issues/93
idr_omero_server_release: 5.6.0
idr_omero_server_release: 5.6.11
omero_server_checkupgrade_comparator: '!='

idr_omero_web_release: 5.25.0
Expand All @@ -22,30 +20,6 @@ idr_omero_web_release: 5.25.0

artifactory_baseurl: "https://artifacts.openmicroscopy.org/artifactory/maven"

# Override the lib/client JARs on the omeroreadwrite server
# Works around the OMERO.server 5.6.3 upgrade issue - to be reverted when
# the server is upgraded
# See https://github.com/IDR/deployment/issues/327
omero_client_jars:
- name: omero-romio
group: org/openmicroscopy
version: "5.6.2"
- name: omero-blitz
group: org/openmicroscopy
version: "5.5.8"

# The IDR OMERO server uses a custom IDR build
idr_bf_jars:
- name: formats-api
group: idr
version: "0.6.10"
- name: formats-bsd
group: idr
version: "0.6.10"
- name: formats-gpl
group: idr
version: "0.6.10"

ice_install_devel: false
ice_install_python: false
# If you're using a CI build you might need to disable omego SSL verification
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10 changes: 4 additions & 6 deletions ansible/idr-omero-readonly.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -208,19 +208,17 @@
- name: Override lib/server JARs
become: yes
get_url:
url: "{{ artifactory_baseurl }}/{{ item.group }}/{{ item.name }}/{{ item.version }}/{{ item.name }}-{{ item.version }}.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/server/{{ item.name }}.jar"
url: "{{ artifactory_baseurl }}/ome/OMEZarrReader/0.4.0/OMEZarrReader-0.4.0.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/server/OMEZarrReader.jar"
force: yes
with_items: "{{ idr_bf_jars }}"
notify: restart omero-server

- name: Override lib/client JARs
become: yes
get_url:
url: "{{ artifactory_baseurl }}/{{ item.group }}/{{ item.name }}/{{ item.version }}/{{ item.name }}-{{ item.version }}.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/client/{{ item.name }}.jar"
url: "{{ artifactory_baseurl }}/ome/OMEZarrReader/0.4.0/OMEZarrReader-0.4.0.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/client/OMEZarrReader.jar"
force: yes
with_items: "{{ omero_client_jars + idr_bf_jars }}"
notify: restart omero-server

- name: Remove OMERO scripts
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10 changes: 4 additions & 6 deletions ansible/idr-omero.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -78,19 +78,17 @@
- name: Override lib/server JARs
become: yes
get_url:
url: "{{ artifactory_baseurl }}/{{ item.group }}/{{ item.name }}/{{ item.version }}/{{ item.name }}-{{ item.version }}.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/server/{{ item.name }}.jar"
url: "{{ artifactory_baseurl }}/ome/OMEZarrReader/0.4.0/OMEZarrReader-0.4.0.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/server/OMEZarrReader.jar"
force: yes
with_items: "{{ idr_bf_jars }}"
notify: restart omero-server

- name: Override lib/client JARs
become: yes
get_url:
url: "{{ artifactory_baseurl }}/{{ item.group }}/{{ item.name }}/{{ item.version }}/{{ item.name }}-{{ item.version }}.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/client/{{ item.name }}.jar"
url: "{{ artifactory_baseurl }}/ome/OMEZarrReader/0.4.0/OMEZarrReader-0.4.0.jar"
dest: "{{ omero_common_basedir }}/server/OMERO.server/lib/client/OMEZarrReader.jar"
force: yes
with_items: "{{ omero_client_jars + idr_bf_jars }}"
notify: restart omero-server

- name: Remove OMERO scripts
Expand Down