fix: resolve broken imports in cardiac_pm.py (#290)

humanc/cardiac_pm.py

@@ -1,4 +1,10 @@
 import numpy as np
+import sys
+import os
+
+cardiac_pm_dir = os.path.join(os.path.dirname(os.path.abspath(__file__)), 'cardiac_pm.dir')
+if cardiac_pm_dir not in sys.path:
+    sys.path.insert(0, cardiac_pm_dir)
 import pulsatile_model_functions as pmf
 import healthy_params as K
 import concore

sample/PZ/pm.py

@@ -0,0 +1,34 @@
+import concore
+import numpy as np
+import ast
+
+
+def pm(u):
+    return u + 0.01
+
+
+concore.default_maxtime(150)
+concore.delay = 0.02
+
+init_simtime_u = "[0.0, 0.0]"
+init_simtime_ym = "[0.0, 0.0]"
+
+ym = np.array([concore.initval(init_simtime_ym)], dtype=np.float64).T
+
+while concore.simtime < concore.maxtime:
+    while concore.unchanged():
+        u_raw = concore.read(1, "u", init_simtime_u)
+        if isinstance(u_raw, str):
+            try:
+                u_raw = ast.literal_eval(u_raw)
+            except (ValueError, SyntaxError):
+                print("Failed to parse fallback u string:", u_raw)
+                u_raw = [0.0]
+        u = np.array([u_raw], dtype=np.float64).T
+
+    ym = pm(u)
+
+    print(f"{concore.simtime}. u={u} ym={ym}")
+    concore.write(1, "ym", [float(x) for x in ym.T[0]], delta=1)
+
+print("retry=" + str(concore.retrycount))

sample/src/pm.py

@@ -0,0 +1,34 @@
+import concore
+import numpy as np
+import ast
+
+
+def pm(u):
+    return u + 0.01
+
+
+concore.default_maxtime(150)
+concore.delay = 0.02
+
+init_simtime_u = "[0.0, 0.0]"
+init_simtime_ym = "[0.0, 0.0]"
+
+ym = np.array([concore.initval(init_simtime_ym)], dtype=np.float64).T
+
+while concore.simtime < concore.maxtime:
+    while concore.unchanged():
+        u_raw = concore.read(1, "u", init_simtime_u)
+        if isinstance(u_raw, str):
+            try:
+                u_raw = ast.literal_eval(u_raw)
+            except (ValueError, SyntaxError):
+                print("Failed to parse fallback u string:", u_raw)
+                u_raw = [0.0]
+        u = np.array([u_raw], dtype=np.float64).T
+
+    ym = pm(u)
+
+    print(f"{concore.simtime}. u={u} ym={ym}")
+    concore.write(1, "ym", [float(x) for x in ym.T[0]], delta=1)
+
+print("retry=" + str(concore.retrycount))

tools/cardiac_pm.py

@@ -1,8 +1,14 @@
 import numpy as np
+import sys
+import os
+import logging
+
+_cardiac_pm_dir = os.path.join(os.path.dirname(os.path.abspath(__file__)), 'cardiac_pm.dir')
+if _cardiac_pm_dir not in sys.path:
+    sys.path.insert(0, _cardiac_pm_dir)
 import pulsatile_model_functions as pmf
 import healthy_params as K
 import concore
-import logging
 
 #x0 = np.loadtxt('pulsatile_steady.txt')