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[WIP] Build PyChaste on Ubuntu 25.10 Questing Quokka #33

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Merged
bdevans merged 6 commits into from
Mar 31, 2026
Merged

[WIP] Build PyChaste on Ubuntu 25.10 Questing Quokka #33

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3c9b645
Attempt to build pychaste on quokka
kwabenantim Mar 24, 2026
555f2b1
Install PyChaste with --user
kwabenantim Mar 30, 2026
429df6f
Pychaste install without cache
kwabenantim Mar 30, 2026
49e8c48
Pychaste extra venv not required
kwabenantim Mar 30, 2026
1482106
Undo pip upgrade
kwabenantim Mar 30, 2026
c638d0b
Fix Pychaste install path
kwabenantim Mar 30, 2026
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13 changes: 8 additions & 5 deletions Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -59,12 +59,15 @@ RUN apt-get update && \
apt-get install -y --no-install-recommends \
chaste-dependencies \
xvfb \
# python3-matplotlib \
# python3-notebook \
# python3-numpy \
# python3-petsc4py \
python3-jupyterlab \
python3-matplotlib \
python3-numpy \
python3-petsc4py \
python3-pip \
python3-venv \
python3-vtk9 \
# python3-xvfbwrapper \
python3-xvfbwrapper \
castxml \
clang \
lldb \
gdb \
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13 changes: 4 additions & 9 deletions scripts/build_chaste.sh
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Expand Up @@ -50,22 +50,17 @@ cmake -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE} \
-H$CHASTE_SOURCE_DIR \
-B$CHASTE_BUILD_DIR

# make --no-print-directory -j$NCORES -C $CHASTE_BUILD_DIR # -f $CHASTE_BUILD_DIR/Makefile
make --no-print-directory -j$NCORES -C $CHASTE_BUILD_DIR # -f $CHASTE_BUILD_DIR/Makefile

if [ "$Chaste_ENABLE_PYCHASTE" = "ON" ]; then
# Build and install PyChaste
echo "Building PyChaste..."
# make --no-print-directory -j$NCORES -C $CHASTE_BUILD_DIR
make --no-print-directory -j$NCORES -C $CHASTE_BUILD_DIR pychaste
python -m pip install --no-cache-dir --user numpy matplotlib petsc4py jupyterlab xvfbwrapper
# python -m pip install --no-cache-dir --user --no-deps pychaste/package
python -m pip install --no-cache-dir --user --no-deps $CHASTE_BUILD_DIR/pychaste/package
# Install PyChaste
echo "Installing PyChaste..."
PIP_BREAK_SYSTEM_PACKAGES=1 python3 -m pip install -v --no-cache-dir --user $CHASTE_BUILD_DIR/pychaste/package

# Test PyChaste
# xvfb-run --server-args="-screen 0 1024x768x24" ctest -L pychaste
else
echo "PyChaste is not enabled."
make --no-print-directory -j$NCORES -C $CHASTE_BUILD_DIR # -f $CHASTE_BUILD_DIR/Makefile
fi

# Save the build info
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