Add forge methods to acces/query datasets from external sources#367

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crisely09 wants to merge 50 commits intomasterfrom

Commits on Dec 12, 2023

Add web service
crisely09
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Commits on Dec 13, 2023

Commits on Dec 14, 2023

Added methods for forge and configuration file
crisely09
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Commits on Jul 5, 2024

Load local configuration when configuration tests (#370)

ssssarah
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MFSY
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Pass view when forge.sparql, forge.elastic, forge.search call (#373)

ssssarah
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filter exception fix (#375)

ssssarah
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added timeouts to every requests. call (#368)

ssssarah
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resolving returns also the hasleafregionpart attribute of the resource

NicoRicardi
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deflatten is independent of order of items. If both prop and prop.something it raises an error

NicoRicardi
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removed prints and fixed linting

NicoRicardi
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comments for clarity as suggested by Sarah Mouffok

NicoRicardi
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previously to deflatten, we check all columns names are strings

NicoRicardi
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Update resource schema (#374)

ssssarah
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Rm metadata fetch when forge.retrieve (#376)

ssssarah
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re-do metadata fetch until endpoint is fixed (#381)

ssssarah
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return resources as dictionaries when forge.elastic if as_resource = False (#382)

ssssarah
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Set jsonld context version to 1.1 (#387)
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Use as default Aggregate SPARQL view (#391)

crisely09
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reset resolver sparql view to default, change store sparql view to aggregated (#392)

ssssarah
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Fixes pyshacl deep nodeshape path eval error (#393)
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Fixed coupled of issues (#394)
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improved deflatten function (lower time complexity)

NicoRicardi
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linting

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Validation with ontology (#396)
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Increased request timeout constant (#400)
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Propagated inference value to model when using forge.validate (#399)

ssssarah
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Expand jsonld context in load_resource_graph_from_source (#401)
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Added AttributeError exception when a None resolver is provided to recursive_resolve when resolving a str jsonld context (#402)
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Add alternateName to agent resolver (#404)

crisely09
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Add `add_image` method to `Dataset` entity (#389)

crisely09
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Update prod-forge-nexus.yml

NicoRicardi
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now it works. (has_rank.id and expanded NCBITaxon)

NicoRicardi
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example of resolving with strain ResolvingStrategies.ipynb

NicoRicardi
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Add method when initializing forge to export pyshacl environment variable (#406)

crisely09
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Remove nexus_sdk from nexus store when uploading files and add `x-nxs-file-content-length` to header (#403)

crisely09
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File fetch (#408)

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rm nexus sdk usage and dependency (#407)

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Fix org and project metadata (#409)

crisely09
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Added v0.8.2 release notes (#410)
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Fix readthedocs yml connfig error: Value build not found (#411)
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Fixed building a SPARQL query from a Filter with __ne__ operator and Literal value (#397)

ssssarah
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Store initialization configuration in forge._config method (#333)

crisely09
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Refactor batch request mechanism (#383)

ssssarah
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rewrite uri as static method (#413)

ssssarah
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Check for schema id to use schema endpoint (#415)

crisely09
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Use schema_id in prepare_update (#416)

crisely09
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Merge master in dev-datasets
MFSY
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Merge branch 'master' into dev-datasets
MFSY
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Commits on Jul 9, 2024

Fixed tox errors
MFSY
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