Update to be compatible with Python 3#5
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burntyellow wants to merge 1 commit intoADicksonLab:masterfrom
Open
Update to be compatible with Python 3#5burntyellow wants to merge 1 commit intoADicksonLab:masterfrom
burntyellow wants to merge 1 commit intoADicksonLab:masterfrom
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| @@ -1 +1 @@ | |||
| build/lib.linux-x86_64-2.7/wex_utils.so No newline at end of file | |||
| build/lib.linux-x86_64-3.7/wex_utils.cpython-37m-x86_64-linux-gnu.so No newline at end of file | |||
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I'm not sure if there should be a .so file included in the repo since this could cause compatibility issues.
| import pandas as pd | ||
| import heapq | ||
| import cPickle as pickle | ||
| #KFW import cPickle as pickle |
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This could probably be better handled by:
try:
import cPickle as pickle
except ImportError:
import pickleI guess this depends on whether we want to maintain python 2/3 compatibility or if we're dropping python2 completely.
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In testing the tutorial
https://www.livecomsjournal.org/article/10607-a-suite-of-tutorials-for-the-westpa-rare-events-sampling-software-article-v1-0
under Matt's Python 3 WESTPA, I encountered some errors. I attempted to fix some of these messages. My changes should have a #KFW in front of the line. Can you also take a look at the provided WExplore_analysis.py in the tutorial? I'm getting a
ModuleNotFoundError: No module named 'westpa.binning'when executing it but it may be that my WESTPA environment is not correct?