From f2724f3e1e329d861a8c3f47ce4b1f5b098f16e0 Mon Sep 17 00:00:00 2001 From: GeorgianaElena Date: Thu, 23 Sep 2021 14:35:14 +0300 Subject: [PATCH 1/4] Install missing r pkgs --- deployments/utoronto/image/Dockerfile | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/deployments/utoronto/image/Dockerfile b/deployments/utoronto/image/Dockerfile index 08ef24c..873ce3b 100644 --- a/deployments/utoronto/image/Dockerfile +++ b/deployments/utoronto/image/Dockerfile @@ -53,8 +53,10 @@ RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD5 RUN echo "deb https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/" > /etc/apt/sources.list.d/cran.list RUN apt-get update -qq --yes > /dev/null && \ apt-get install --yes -qq \ - r-base-core=${R_VERSION} \ + r-base=${R_VERSION} \ r-base-dev=${R_VERSION} \ + r-base-core=${R_VERSION} \ + r-recommended=${R_VERSION} \ r-cran-littler=0.3.11-1.2004.0 \ nodejs \ npm > /dev/null From f1ab666c1a5e91cfd597bba503dd0e3e6df70056 Mon Sep 17 00:00:00 2001 From: GeorgianaElena Date: Thu, 23 Sep 2021 14:48:59 +0300 Subject: [PATCH 2/4] Remove r-base-core --- deployments/utoronto/image/Dockerfile | 1 - 1 file changed, 1 deletion(-) diff --git a/deployments/utoronto/image/Dockerfile b/deployments/utoronto/image/Dockerfile index 873ce3b..a639e68 100644 --- a/deployments/utoronto/image/Dockerfile +++ b/deployments/utoronto/image/Dockerfile @@ -55,7 +55,6 @@ RUN apt-get update -qq --yes > /dev/null && \ apt-get install --yes -qq \ r-base=${R_VERSION} \ r-base-dev=${R_VERSION} \ - r-base-core=${R_VERSION} \ r-recommended=${R_VERSION} \ r-cran-littler=0.3.11-1.2004.0 \ nodejs \ From 5eba6627132d6ca617a884fa582315699bd5ea4b Mon Sep 17 00:00:00 2001 From: GeorgianaElena Date: Thu, 23 Sep 2021 20:34:24 +0300 Subject: [PATCH 3/4] Bump voila version to get a newer jupyter-server --- deployments/utoronto/image/environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/deployments/utoronto/image/environment.yml b/deployments/utoronto/image/environment.yml index 425582d..342fa95 100644 --- a/deployments/utoronto/image/environment.yml +++ b/deployments/utoronto/image/environment.yml @@ -30,7 +30,7 @@ dependencies: - pip: # Infrastructure things - jupyterlab==2.* - - voila==0.1.23 + - voila==0.2.3 - nbgitpuller==0.9.* - jupyter-resource-usage==0.5.1 - nbinteract==0.2.5 From 1e38f41d1a5dff192eb1ed5ff44728af498d54ba Mon Sep 17 00:00:00 2001 From: GeorgianaElena Date: Fri, 24 Sep 2021 11:24:46 +0300 Subject: [PATCH 4/4] Remove nbinteract --- deployments/utoronto/image/environment.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/deployments/utoronto/image/environment.yml b/deployments/utoronto/image/environment.yml index 342fa95..46686a4 100644 --- a/deployments/utoronto/image/environment.yml +++ b/deployments/utoronto/image/environment.yml @@ -33,7 +33,6 @@ dependencies: - voila==0.2.3 - nbgitpuller==0.9.* - jupyter-resource-usage==0.5.1 - - nbinteract==0.2.5 - jupytext==1.6.* - RISE==5.6.1 - jupyter_contrib_nbextensions==0.5.1