diff --git a/Cargo.lock b/Cargo.lock index 90653d3..26e454f 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -2,36 +2,21 @@ # It is not intended for manual editing. version = 4 -[[package]] -name = "addr2line" -version = "0.24.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dfbe277e56a376000877090da837660b4427aad530e3028d44e0bffe4f89a1c1" -dependencies = [ - "gimli", -] - [[package]] name = "adler2" -version = "2.0.0" +version = "2.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "512761e0bb2578dd7380c6baaa0f4ce03e84f95e960231d1dec8bf4d7d6e2627" +checksum = "320119579fcad9c21884f5c4861d16174d0e06250625266f50fe6898340abefa" [[package]] name = "aho-corasick" -version = "1.1.3" +version = "1.1.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8e60d3430d3a69478ad0993f19238d2df97c507009a52b3c10addcd7f6bcb916" +checksum = "ddd31a130427c27518df266943a5308ed92d4b226cc639f5a8f1002816174301" dependencies = [ "memchr", ] -[[package]] -name = "android-tzdata" -version = "0.1.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e999941b234f3131b00bc13c22d06e8c5ff726d1b6318ac7eb276997bbb4fef0" - [[package]] name = "android_system_properties" version = "0.1.5" @@ -49,9 +34,9 @@ checksum = "4b46cbb362ab8752921c97e041f5e366ee6297bd428a31275b9fcf1e380f7299" [[package]] name = "anstream" -version = "0.6.18" +version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8acc5369981196006228e28809f761875c0327210a891e941f4c683b3a99529b" +checksum = "824a212faf96e9acacdbd09febd34438f8f711fb84e09a8916013cd7815ca28d" dependencies = [ "anstyle", "anstyle-parse", @@ -64,39 +49,45 @@ dependencies = [ [[package]] name = "anstyle" -version = "1.0.10" +version = "1.0.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "55cc3b69f167a1ef2e161439aa98aed94e6028e5f9a59be9a6ffb47aef1651f9" +checksum = "940b3a0ca603d1eade50a4846a2afffd5ef57a9feac2c0e2ec2e14f9ead76000" [[package]] name = "anstyle-parse" -version = "0.2.6" +version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3b2d16507662817a6a20a9ea92df6652ee4f94f914589377d69f3b21bc5798a9" +checksum = "52ce7f38b242319f7cabaa6813055467063ecdc9d355bbb4ce0c68908cd8130e" dependencies = [ "utf8parse", ] [[package]] name = "anstyle-query" -version = "1.1.2" +version = "1.1.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "79947af37f4177cfead1110013d678905c37501914fba0efea834c3fe9a8d60c" +checksum = "40c48f72fd53cd289104fc64099abca73db4166ad86ea0b4341abe65af83dadc" dependencies = [ - "windows-sys 0.59.0", + "windows-sys 0.61.2", ] [[package]] name = "anstyle-wincon" -version = "3.0.7" +version = "3.0.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ca3534e77181a9cc07539ad51f2141fe32f6c3ffd4df76db8ad92346b003ae4e" +checksum = "291e6a250ff86cd4a820112fb8898808a366d8f9f58ce16d1f538353ad55747d" dependencies = [ "anstyle", - "once_cell", - "windows-sys 0.59.0", + "once_cell_polyfill", + "windows-sys 0.61.2", ] +[[package]] +name = "anyhow" +version = "1.0.102" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7f202df86484c868dbad7eaa557ef785d5c66295e41b460ef922eca0723b842c" + [[package]] name = "askama" version = "0.12.1" @@ -143,22 +134,21 @@ dependencies = [ [[package]] name = "async-compression" -version = "0.4.23" +version = "0.4.41" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b37fc50485c4f3f736a4fb14199f6d5f5ba008d7f28fe710306c92780f004c07" +checksum = "d0f9ee0f6e02ffd7ad5816e9464499fba7b3effd01123b515c41d1697c43dad1" dependencies = [ - "flate2", - "futures-core", - "memchr", + "compression-codecs", + "compression-core", "pin-project-lite", "tokio", ] [[package]] name = "async-trait" -version = "0.1.88" +version = "0.1.89" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e539d3fca749fcee5236ab05e93a52867dd549cc157c8cb7f99595f3cedffdb5" +checksum = "9035ad2d096bed7955a320ee7e2230574d28fd3c3a0f186cbea1ff3c7eed5dbb" dependencies = [ "proc-macro2", "quote", @@ -173,9 +163,9 @@ checksum = "1505bd5d3d116872e7271a6d4e16d81d0c8570876c8de68093a09ac269d8aac0" [[package]] name = "autocfg" -version = "1.4.0" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ace50bade8e6234aa140d9a2f552bbee1db4d353f69b8217bc503490fc1a9f26" +checksum = "c08606f8c3cbf4ce6ec8e28fb0014a2c086708fe954eaa885384a6165172e7e8" [[package]] name = "axum" @@ -207,7 +197,7 @@ dependencies = [ "serde_urlencoded", "sync_wrapper", "tokio", - "tower 0.5.2", + "tower 0.5.3", "tower-layer", "tower-service", "tracing", @@ -245,21 +235,6 @@ dependencies = [ "syn", ] -[[package]] -name = "backtrace" -version = "0.3.75" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6806a6321ec58106fea15becdad98371e28d92ccbc7c8f1b3b6dd724fe8f1002" -dependencies = [ - "addr2line", - "cfg-if", - "libc", - "miniz_oxide", - "object", - "rustc-demangle", - "windows-targets 0.52.6", -] - [[package]] name = "base64" version = "0.22.1" @@ -278,31 +253,19 @@ dependencies = [ [[package]] name = "bitarray" version = "0.1.0" -source = "git+https://github.com/unipept/unipept-index.git#fbc93285e334ef62f6697406cb621d14b32d1903" +source = "git+https://github.com/unipept/unipept-index.git?branch=feature%2Fspeedup-loading-index#38b45d9c4d2e09603f1f0b914b72a230415f621a" [[package]] name = "bitflags" -version = "2.9.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1b8e56985ec62d17e9c1001dc89c88ecd7dc08e47eba5ec7c29c7b5eeecde967" - -[[package]] -name = "bitvec" -version = "1.0.1" +version = "2.11.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1bc2832c24239b0141d5674bb9174f9d68a8b5b3f2753311927c172ca46f7e9c" -dependencies = [ - "funty", - "radium", - "tap", - "wyz", -] +checksum = "843867be96c8daad0d758b57df9392b6d8d271134fce549de6ce169ff98a92af" [[package]] name = "bumpalo" -version = "3.17.0" +version = "3.20.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1628fb46dfa0b37568d12e5edd512553eccf6a22a78e8bde00bb4aed84d5bdbf" +checksum = "5d20789868f4b01b2f2caec9f5c4e0213b41e3e5702a50157d699ae31ced2fcb" [[package]] name = "bytelines" @@ -322,9 +285,9 @@ checksum = "1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b" [[package]] name = "bytes" -version = "1.10.1" +version = "1.11.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d71b6127be86fdcfddb610f7182ac57211d4b18a3e9c82eb2d17662f2227ad6a" +checksum = "1e748733b7cbc798e1434b6ac524f0c1ff2ab456fe201501e6497c8417a4fc33" [[package]] name = "cast" @@ -334,26 +297,26 @@ checksum = "37b2a672a2cb129a2e41c10b1224bb368f9f37a2b16b612598138befd7b37eb5" [[package]] name = "cc" -version = "1.2.23" +version = "1.2.58" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5f4ac86a9e5bc1e2b3449ab9d7d3a6a405e3d1bb28d7b9be8614f55846ae3766" +checksum = "e1e928d4b69e3077709075a938a05ffbedfa53a84c8f766efbf8220bb1ff60e1" dependencies = [ + "find-msvc-tools", "shlex", ] [[package]] name = "cfg-if" -version = "1.0.0" +version = "1.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" +checksum = "9330f8b2ff13f34540b44e946ef35111825727b38d33286ef986142615121801" [[package]] name = "chrono" -version = "0.4.41" +version = "0.4.44" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c469d952047f47f91b68d1cba3f10d63c11d73e4636f24f08daf0278abf01c4d" +checksum = "c673075a2e0e5f4a1dde27ce9dee1ea4558c7ffe648f576438a20ca1d2acc4b0" dependencies = [ - "android-tzdata", "iana-time-zone", "num-traits", "serde", @@ -389,9 +352,9 @@ dependencies = [ [[package]] name = "clap" -version = "4.5.38" +version = "4.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ed93b9805f8ba930df42c2590f05453d5ec36cbb85d018868a5b24d31f6ac000" +checksum = "b193af5b67834b676abd72466a96c1024e6a6ad978a1f484bd90b85c94041351" dependencies = [ "clap_builder", "clap_derive", @@ -399,9 +362,9 @@ dependencies = [ [[package]] name = "clap_builder" -version = "4.5.38" +version = "4.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "379026ff283facf611b0ea629334361c4211d1b12ee01024eec1591133b04120" +checksum = "714a53001bf66416adb0e2ef5ac857140e7dc3a0c48fb28b2f10762fc4b5069f" dependencies = [ "anstream", "anstyle", @@ -411,9 +374,9 @@ dependencies = [ [[package]] name = "clap_derive" -version = "4.5.32" +version = "4.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "09176aae279615badda0765c0c0b3f6ed53f4709118af73cf4655d85d1530cd7" +checksum = "1110bd8a634a1ab8cb04345d8d878267d57c3cf1b38d91b71af6686408bbca6a" dependencies = [ "heck", "proc-macro2", @@ -423,15 +386,32 @@ dependencies = [ [[package]] name = "clap_lex" -version = "0.7.4" +version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f46ad14479a25103f283c0f10005961cf086d8dc42205bb44c46ac563475dca6" +checksum = "c8d4a3bb8b1e0c1050499d1815f5ab16d04f0959b233085fb31653fbfc9d98f9" [[package]] name = "colorchoice" -version = "1.0.3" +version = "1.0.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1d07550c9036bf2ae0c684c4297d503f838287c83c53686d05370d0e139ae570" + +[[package]] +name = "compression-codecs" +version = "0.4.37" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "eb7b51a7d9c967fc26773061ba86150f19c50c0d65c887cb1fbe295fd16619b7" +dependencies = [ + "compression-core", + "flate2", + "memchr", +] + +[[package]] +name = "compression-core" +version = "0.4.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5b63caa9aa9397e2d9480a9b13673856c78d8ac123288526c37d7839f2a86990" +checksum = "75984efb6ed102a0d42db99afb6c1948f0380d1d91808d5529916e6c08b49d8d" [[package]] name = "core-foundation" @@ -443,6 +423,16 @@ dependencies = [ "libc", ] +[[package]] +name = "core-foundation" +version = "0.10.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b2a6cd9ae233e7f62ba4e9353e81a88df7fc8a5987b8d445b4d90c879bd156f6" +dependencies = [ + "core-foundation-sys", + "libc", +] + [[package]] name = "core-foundation-sys" version = "0.8.7" @@ -451,9 +441,9 @@ checksum = "773648b94d0e5d620f64f280777445740e61fe701025087ec8b57f45c791888b" [[package]] name = "crc32fast" -version = "1.4.2" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a97769d94ddab943e4510d138150169a2758b5ef3eb191a9ee688de3e23ef7b3" +checksum = "9481c1c90cbf2ac953f07c8d4a58aa3945c425b7185c9154d67a65e4230da511" dependencies = [ "cfg-if", ] @@ -521,15 +511,15 @@ checksum = "d0a5c400df2834b80a4c3327b3aad3a4c4cd4de0629063962b03235697506a28" [[package]] name = "crunchy" -version = "0.2.3" +version = "0.2.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "43da5946c66ffcc7745f48db692ffbb10a83bfe0afd96235c5c2a4fb23994929" +checksum = "460fbee9c2c2f33933d720630a6a0bac33ba7053db5344fac858d4b8952d77d5" [[package]] name = "darling" -version = "0.20.11" +version = "0.23.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fc7f46116c46ff9ab3eb1597a45688b6715c6e628b5c133e288e709a29bcb4ee" +checksum = "25ae13da2f202d56bd7f91c25fba009e7717a1e4a1cc98a76d844b65ae912e9d" dependencies = [ "darling_core", "darling_macro", @@ -537,11 +527,10 @@ dependencies = [ [[package]] name = "darling_core" -version = "0.20.11" +version = "0.23.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0d00b9596d185e565c2207a0b01f8bd1a135483d02d9b7b0a54b11da8d53412e" +checksum = "9865a50f7c335f53564bb694ef660825eb8610e0a53d3e11bf1b0d3df31e03b0" dependencies = [ - "fnv", "ident_case", "proc-macro2", "quote", @@ -551,9 +540,9 @@ dependencies = [ [[package]] name = "darling_macro" -version = "0.20.11" +version = "0.23.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fc34b93ccb385b40dc71c6fceac4b2ad23662c7eeb248cf10d529b7e055b6ead" +checksum = "ac3984ec7bd6cfa798e62b4a642426a5be0e68f9401cfc2a01e3fa9ea2fcdb8d" dependencies = [ "darling_core", "quote", @@ -584,12 +573,12 @@ dependencies = [ [[package]] name = "deranged" -version = "0.4.0" +version = "0.5.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9c9e6a11ca8224451684bc0d7d5a7adbf8f2fd6887261a1cfc3c0432f9d4068e" +checksum = "7cd812cc2bc1d69d4764bd80df88b4317eaef9e773c75226407d9bc0876b211c" dependencies = [ "powerfmt", - "serde", + "serde_core", ] [[package]] @@ -605,9 +594,9 @@ dependencies = [ [[package]] name = "dyn-clone" -version = "1.0.19" +version = "1.0.20" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1c7a8fb8a9fbf66c1f703fe16184d10ca0ee9d23be5b4436400408ba54a95005" +checksum = "d0881ea181b1df73ff77ffaaf9c7544ecc11e82fba9b5f27b262a3c73a332555" [[package]] name = "either" @@ -632,18 +621,18 @@ checksum = "877a4ace8713b0bcf2a4e7eec82529c029f1d0619886d18145fea96c3ffe5c0f" [[package]] name = "errno" -version = "0.3.12" +version = "0.3.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cea14ef9355e3beab063703aa9dab15afd25f0667c341310c1e5274bb1d0da18" +checksum = "39cab71617ae0d63f51a36d69f866391735b51691dbda63cf6f96d042b63efeb" dependencies = [ "libc", - "windows-sys 0.59.0", + "windows-sys 0.61.2", ] [[package]] name = "fa-compression" version = "0.1.0" -source = "git+https://github.com/unipept/unipept-index.git#fbc93285e334ef62f6697406cb621d14b32d1903" +source = "git+https://github.com/unipept/unipept-index.git?branch=feature%2Fspeedup-loading-index#38b45d9c4d2e09603f1f0b914b72a230415f621a" [[package]] name = "fastrand" @@ -651,11 +640,17 @@ version = "2.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "37909eebbb50d72f9059c3b6d82c0463f2ff062c9e95845c43a6c9c0355411be" +[[package]] +name = "find-msvc-tools" +version = "0.1.9" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5baebc0774151f905a1a2cc41989300b1e6fbb29aff0ceffa1064fdd3088d582" + [[package]] name = "flate2" -version = "1.1.1" +version = "1.1.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7ced92e76e966ca2fd84c8f7aa01a4aea65b0eb6648d72f7c8f3e2764a67fece" +checksum = "843fba2746e448b37e26a819579957415c8cef339bf08564fe8b7ddbd959573c" dependencies = [ "crc32fast", "miniz_oxide", @@ -667,6 +662,12 @@ version = "1.0.7" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3f9eec918d3f24069decb9af1554cad7c880e2da24a9afd88aca000531ab82c1" +[[package]] +name = "foldhash" +version = "0.1.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d9c4f5dac5e15c24eb999c26181a6ca40b39fe946cbe4c263c7209467bc83af2" + [[package]] name = "foreign-types" version = "0.3.2" @@ -684,92 +685,81 @@ checksum = "00b0228411908ca8685dba7fc2cdd70ec9990a6e753e89b6ac91a84c40fbaf4b" [[package]] name = "form_urlencoded" -version = "1.2.1" +version = "1.2.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e13624c2627564efccf4934284bdd98cbaa14e79b0b5a141218e507b3a823456" +checksum = "cb4cb245038516f5f85277875cdaa4f7d2c9a0fa0468de06ed190163b1581fcf" dependencies = [ "percent-encoding", ] -[[package]] -name = "funty" -version = "2.0.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e6d5a32815ae3f33302d95fdcb2ce17862f8c65363dcfd29360480ba1001fc9c" - 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"fnv", "itoa", ] @@ -881,13 +880,14 @@ dependencies = [ [[package]] name = "hyper" -version = "1.6.0" +version = "1.8.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cc2b571658e38e0c01b1fdca3bbbe93c00d3d71693ff2770043f8c29bc7d6f80" +checksum = "2ab2d4f250c3d7b1c9fcdff1cece94ea4e2dfbec68614f7b87cb205f24ca9d11" dependencies = [ + "atomic-waker", "bytes", "futures-channel", - "futures-util", + "futures-core", "h2", "http", "http-body", @@ -895,6 +895,7 @@ dependencies = [ "httpdate", "itoa", "pin-project-lite", + "pin-utils", "smallvec", "tokio", "want", @@ -902,11 +903,10 @@ dependencies = [ [[package]] name = "hyper-rustls" -version = "0.27.5" +version = "0.27.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2d191583f3da1305256f22463b9bb0471acad48a4e534a5218b9963e9c1f59b2" +checksum = "e3c93eb611681b207e1fe55d5a71ecf91572ec8a6705cdb6857f7d8d5242cf58" dependencies = [ - "futures-util", "http", "hyper", "hyper-util", @@ -935,29 +935,34 @@ dependencies = [ [[package]] name = "hyper-util" -version = "0.1.11" +version = "0.1.20" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "497bbc33a26fdd4af9ed9c70d63f61cf56a938375fbb32df34db9b1cd6d643f2" +checksum = "96547c2556ec9d12fb1578c4eaf448b04993e7fb79cbaad930a656880a6bdfa0" dependencies = [ + "base64", "bytes", "futures-channel", "futures-util", "http", "http-body", "hyper", + "ipnet", "libc", + "percent-encoding", "pin-project-lite", "socket2", + "system-configuration", "tokio", "tower-service", "tracing", + "windows-registry", ] [[package]] name = "iana-time-zone" -version = "0.1.63" +version = "0.1.65" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b0c919e5debc312ad217002b8048a17b7d83f80703865bbfcfebb0458b0b27d8" +checksum = "e31bc9ad994ba00e440a8aa5c9ef0ec67d5cb5e5cb0cc7f8b744a35b389cc470" dependencies = [ "android_system_properties", "core-foundation-sys", @@ -979,9 +984,9 @@ dependencies = [ [[package]] name = "icu_collections" -version = "2.0.0" +version = "2.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "200072f5d0e3614556f94a9930d5dc3e0662a652823904c3a75dc3b0af7fee47" +checksum = "4c6b649701667bbe825c3b7e6388cb521c23d88644678e83c0c4d0a621a34b43" dependencies = [ "displaydoc", "potential_utf", @@ -992,9 +997,9 @@ dependencies = [ [[package]] name = "icu_locale_core" -version = "2.0.0" +version = "2.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0cde2700ccaed3872079a65fb1a78f6c0a36c91570f28755dda67bc8f7d9f00a" +checksum = "edba7861004dd3714265b4db54a3c390e880ab658fec5f7db895fae2046b5bb6" dependencies = [ "displaydoc", "litemap", @@ -1005,11 +1010,10 @@ dependencies = [ [[package]] name = "icu_normalizer" -version = "2.0.0" +version = "2.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "436880e8e18df4d7bbc06d58432329d6458cc84531f7ac5f024e93deadb37979" +checksum = "5f6c8828b67bf8908d82127b2054ea1b4427ff0230ee9141c54251934ab1b599" dependencies = [ - "displaydoc", "icu_collections", "icu_normalizer_data", "icu_properties", @@ -1020,42 +1024,38 @@ dependencies = [ [[package]] name = "icu_normalizer_data" -version = "2.0.0" +version = "2.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "00210d6893afc98edb752b664b8890f0ef174c8adbb8d0be9710fa66fbbf72d3" +checksum = "7aedcccd01fc5fe81e6b489c15b247b8b0690feb23304303a9e560f37efc560a" [[package]] name = "icu_properties" -version = "2.0.0" +version = "2.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2549ca8c7241c82f59c80ba2a6f415d931c5b58d24fb8412caa1a1f02c49139a" +checksum = "020bfc02fe870ec3a66d93e677ccca0562506e5872c650f893269e08615d74ec" dependencies = [ - "displaydoc", "icu_collections", "icu_locale_core", "icu_properties_data", "icu_provider", - "potential_utf", "zerotrie", "zerovec", ] [[package]] name = "icu_properties_data" -version = "2.0.0" +version = "2.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8197e866e47b68f8f7d95249e172903bec06004b18b2937f1095d40a0c57de04" +checksum = "616c294cf8d725c6afcd8f55abc17c56464ef6211f9ed59cccffe534129c77af" [[package]] name = "icu_provider" -version = "2.0.0" +version = "2.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "03c80da27b5f4187909049ee2d72f276f0d9f99a42c306bd0131ecfe04d8e5af" +checksum = "85962cf0ce02e1e0a629cc34e7ca3e373ce20dda4c4d7294bbd0bf1fdb59e614" dependencies = [ "displaydoc", "icu_locale_core", - "stable_deref_trait", - "tinystr", "writeable", "yoke", "zerofrom", @@ -1063,6 +1063,12 @@ dependencies = [ "zerovec", ] +[[package]] +name = "id-arena" +version = "2.3.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "3d3067d79b975e8844ca9eb072e16b31c3c1c36928edf9c6789548c524d0d954" + [[package]] name = "ident_case" version = "1.0.1" @@ -1071,9 +1077,9 @@ checksum = "b9e0384b61958566e926dc50660321d12159025e767c18e043daf26b70104c39" [[package]] name = "idna" -version = "1.0.3" +version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "686f825264d630750a544639377bae737628043f20d38bbc029e8f29ea968a7e" +checksum = "3b0875f23caa03898994f6ddc501886a45c7d3d62d04d2d90788d47be1b1e4de" dependencies = [ "idna_adapter", "smallvec", @@ -1094,9 +1100,8 @@ dependencies = [ name = "index" version = "2.3.2" dependencies = [ - "sa-compression", "sa-index", - "sa-mappings", + "sa-server", "thiserror", ] @@ -1113,37 +1118,48 @@ dependencies = [ [[package]] name = "indexmap" -version = "2.9.0" +version = "2.13.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cea70ddb795996207ad57735b50c5982d8844f38ba9ee5f1aedcfb708a2aa11e" +checksum = "7714e70437a7dc3ac8eb7e6f8df75fd8eb422675fc7678aff7364301092b1017" dependencies = [ "equivalent", - "hashbrown 0.15.3", + "hashbrown 0.16.1", "serde", + "serde_core", ] [[package]] name = "ipnet" -version = "2.11.0" +version = "2.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "469fb0b9cefa57e3ef31275ee7cacb78f2fdca44e4765491884a2b119d4eb130" +checksum = "d98f6fed1fde3f8c21bc40a1abb88dd75e67924f9cffc3ef95607bad8017f8e2" + +[[package]] +name = "iri-string" +version = "0.7.12" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "25e659a4bb38e810ebc252e53b5814ff908a8c58c2a9ce2fae1bbec24cbf4e20" +dependencies = [ + "memchr", + "serde", +] [[package]] name = "is-terminal" -version = "0.4.16" +version = "0.4.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e04d7f318608d35d4b61ddd75cbdaee86b023ebe2bd5a66ee0915f0bf93095a9" +checksum = "3640c1c38b8e4e43584d8df18be5fc6b0aa314ce6ebf51b53313d4306cca8e46" dependencies = [ "hermit-abi", "libc", - "windows-sys 0.59.0", + "windows-sys 0.61.2", ] [[package]] name = "is_terminal_polyfill" -version = "1.70.1" +version = "1.70.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7943c866cc5cd64cbc25b2e01621d07fa8eb2a1a23160ee81ce38704e97b8ecf" +checksum = "a6cb138bb79a146c1bd460005623e142ef0181e3d0219cb493e02f7d08a35695" [[package]] name = "itertools" @@ -1165,16 +1181,18 @@ dependencies = [ [[package]] name = "itoa" -version = "1.0.15" +version = "1.0.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4a5f13b858c8d314ee3e8f639011f7ccefe71f97f96e50151fb991f267928e2c" +checksum = "8f42a60cbdf9a97f5d2305f08a87dc4e09308d1276d28c869c684d7777685682" [[package]] name = "js-sys" -version = "0.3.77" +version = "0.3.92" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1cfaf33c695fc6e08064efbc1f72ec937429614f25eef83af942d0e227c3a28f" +checksum = "cc4c90f45aa2e6eacbe8645f77fdea542ac97a494bcd117a67df9ff4d611f995" dependencies = [ + "cfg-if", + "futures-util", "once_cell", "wasm-bindgen", ] @@ -1185,53 +1203,58 @@ version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe" +[[package]] +name = "leb128fmt" +version = "0.1.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "09edd9e8b54e49e587e4f6295a7d29c3ea94d469cb40ab8ca70b288248a81db2" + [[package]] name = "libc" -version = "0.2.172" +version = "0.2.183" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d750af042f7ef4f724306de029d18836c26c1765a54a6a3f094cbd23a7267ffa" +checksum = "b5b646652bf6661599e1da8901b3b9522896f01e736bad5f723fe7a3a27f899d" [[package]] name = "libm" -version = "0.2.15" +version = "0.2.16" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f9fbbcab51052fe104eb5e5d351cf728d30a5be1fe14d9be8a3b097481fb97de" +checksum = "b6d2cec3eae94f9f509c767b45932f1ada8350c4bdb85af2fcab4a3c14807981" [[package]] name = "linux-raw-sys" -version = "0.9.4" +version = "0.12.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cd945864f07fe9f5371a27ad7b52a172b4b499999f1d97574c9fa68373937e12" +checksum = "32a66949e030da00e8c7d4434b251670a91556f4144941d37452769c25d58a53" [[package]] name = "litemap" -version = "0.8.0" +version = "0.8.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "241eaef5fd12c88705a01fc1066c48c4b36e0dd4377dcdc7ec3942cea7a69956" +checksum = "6373607a59f0be73a39b6fe456b8192fcc3585f602af20751600e974dd455e77" [[package]] name = "lock_api" -version = "0.4.12" +version = "0.4.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "07af8b9cdd281b7915f413fa73f29ebd5d55d0d3f0155584dade1ff18cea1b17" +checksum = "224399e74b87b5f3557511d98dff8b14089b3dadafcab6bb93eab67d3aace965" dependencies = [ - "autocfg", "scopeguard", ] [[package]] name = "log" -version = "0.4.27" +version = "0.4.29" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "13dc2df351e3202783a1fe0d44375f7295ffb4049267b0f3018346dc122a1d94" +checksum = "5e5032e24019045c762d3c0f28f5b6b8bbf38563a65908389bf7978758920897" [[package]] name = "matchers" -version = "0.1.0" +version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8263075bb86c5a1b1427b5ae862e8889656f126e9f77c484496e8b47cf5c5558" +checksum = "d1525a2a28c7f4fa0fc98bb91ae755d1e2d1505079e05539e35bc876b5d65ae9" dependencies = [ - "regex-automata 0.1.10", + "regex-automata", ] [[package]] @@ -1242,9 +1265,18 @@ checksum = "0e7465ac9959cc2b1404e8e2367b43684a6d13790fe23056cc8c6c5a6b7bcb94" [[package]] name = "memchr" -version = "2.7.4" +version = "2.8.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "78ca9ab1a0babb1e7d5695e3530886289c18cf2f87ec19a575a0abdce112e3a3" +checksum = "f8ca58f447f06ed17d5fc4043ce1b10dd205e060fb3ce5b979b8ed8e59ff3f79" + +[[package]] +name = "memmap2" +version = "0.9.10" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "714098028fe011992e1c3962653c96b2d578c4b4bce9036e15ff220319b1e0e3" +dependencies = [ + "libc", +] [[package]] name = "mime" @@ -1270,22 +1302,23 @@ checksum = "68354c5c6bd36d73ff3feceb05efa59b6acb7626617f4962be322a825e61f79a" [[package]] name = "miniz_oxide" -version = "0.8.8" +version = "0.8.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3be647b768db090acb35d5ec5db2b0e1f1de11133ca123b9eacf5137868f892a" +checksum = "1fa76a2c86f704bdb222d66965fb3d63269ce38518b83cb0575fca855ebb6316" dependencies = [ "adler2", + "simd-adler32", ] [[package]] name = "mio" -version = "1.0.3" +version = "1.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2886843bf800fba2e3377cff24abf6379b4c4d5c6681eaf9ea5b0d15090450bd" +checksum = "50b7e5b27aa02a74bac8c3f23f448f8d87ff11f92d3aac1a6ed369ee08cc56c1" dependencies = [ "libc", - "wasi 0.11.0+wasi-snapshot-preview1", - "windows-sys 0.52.0", + "wasi", + "windows-sys 0.61.2", ] [[package]] @@ -1307,9 +1340,9 @@ dependencies = [ [[package]] name = "native-tls" -version = "0.2.14" +version = "0.2.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "87de3442987e9dbec73158d5c715e7ad9072fda936bb03d19d7fa10e00520f0e" +checksum = "465500e14ea162429d264d44189adc38b199b62b1c21eea9f69e4b73cb03bbf2" dependencies = [ "libc", "log", @@ -1334,19 +1367,18 @@ dependencies = [ [[package]] name = "nu-ansi-term" -version = "0.46.0" +version = "0.50.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "77a8165726e8236064dbb45459242600304b42a5ea24ee2948e18e023bf7ba84" +checksum = "7957b9740744892f114936ab4a57b3f487491bbeafaf8083688b16841a4240e5" dependencies = [ - "overload", - "winapi", + "windows-sys 0.61.2", ] [[package]] name = "num-conv" -version = "0.1.0" +version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "51d515d32fb182ee37cda2ccdcb92950d6a3c2893aa280e540671c2cd0f3b1d9" +checksum = "c6673768db2d862beb9b39a78fdcb1a69439615d5794a1be50caa9bc92c81967" [[package]] name = "num-traits" @@ -1358,19 +1390,16 @@ dependencies = [ ] [[package]] -name = "object" -version = "0.36.7" +name = "once_cell" +version = "1.21.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "62948e14d923ea95ea2c7c86c71013138b66525b86bdc08d2dcc262bdb497b87" -dependencies = [ - "memchr", -] +checksum = "9f7c3e4beb33f85d45ae3e3a1792185706c8e16d043238c593331cc7cd313b50" [[package]] -name = "once_cell" -version = "1.21.3" +name = "once_cell_polyfill" +version = "1.70.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "42f5e15c9953c5e4ccceeb2e7382a716482c34515315f7b03532b8b4e8393d2d" +checksum = "384b8ab6d37215f3c5301a95a4accb5d64aa607f1fcb26a11b5303878451b4fe" [[package]] name = "oorandom" @@ -1380,16 +1409,16 @@ checksum = "d6790f58c7ff633d8771f42965289203411a5e5c68388703c06e14f24770b41e" [[package]] name = "opensearch" -version = "2.3.0" +version = "2.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a62b025c3503d3d53eaba3b6f14adb955af9f69fc71141b4d030a4e5331f5d42" +checksum = "2af6815a23449a0860c8fe049a828c3589d3ad56d3b5875d0d1f340d1291871e" dependencies = [ "base64", "bytes", "dyn-clone", "lazy_static", "percent-encoding", - "reqwest", + "reqwest 0.13.2", "rustc_version", "serde", "serde_json", @@ -1400,9 +1429,9 @@ dependencies = [ [[package]] name = "openssl" -version = "0.10.72" +version = "0.10.76" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fedfea7d58a1f73118430a55da6a286e7b044961736ce96a16a17068ea25e5da" +checksum = "951c002c75e16ea2c65b8c7e4d3d51d5530d8dfa7d060b4776828c88cfb18ecf" dependencies = [ "bitflags", "cfg-if", @@ -1426,15 +1455,15 @@ dependencies = [ [[package]] name = "openssl-probe" -version = "0.1.6" +version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d05e27ee213611ffe7d6348b942e8f942b37114c00cc03cec254295a4a17852e" +checksum = "7c87def4c32ab89d880effc9e097653c8da5d6ef28e6b539d313baaacfbafcbe" [[package]] name = "openssl-sys" -version = "0.9.108" +version = "0.9.112" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e145e1651e858e820e4860f7b9c5e169bc1d8ce1c86043be79fa7b7634821847" +checksum = "57d55af3b3e226502be1526dfdba67ab0e9c96fc293004e79576b2b9edb0dbdb" dependencies = [ "cc", "libc", @@ -1442,17 +1471,11 @@ dependencies = [ "vcpkg", ] -[[package]] -name = "overload" -version = "0.1.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b15813163c1d831bf4a13c3610c05c0d03b39feb07f7e09fa234dac9b15aaf39" - [[package]] name = "parking_lot" -version = "0.12.3" +version = "0.12.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f1bf18183cf54e8d6059647fc3063646a1801cf30896933ec2311622cc4b9a27" +checksum = "93857453250e3077bd71ff98b6a65ea6621a19bb0f559a85248955ac12c45a1a" dependencies = [ "lock_api", "parking_lot_core", @@ -1460,15 +1483,15 @@ dependencies = [ [[package]] name = "parking_lot_core" -version = "0.9.10" +version = "0.9.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1e401f977ab385c9e4e3ab30627d6f26d00e2c73eef317493c4ec6d468726cf8" +checksum = "2621685985a2ebf1c516881c026032ac7deafcda1a2c9b7850dc81e3dfcb64c1" dependencies = [ "cfg-if", "libc", "redox_syscall", "smallvec", - "windows-targets 0.52.6", + "windows-link", ] [[package]] @@ -1479,15 +1502,15 @@ checksum = "57c0d7b74b563b49d38dae00a0c37d4d6de9b432382b2892f0574ddcae73fd0a" [[package]] name = "percent-encoding" -version = "2.3.1" +version = "2.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e3148f5046208a5d56bcfc03053e3ca6334e51da8dfb19b6cdc8b306fae3283e" +checksum = "9b4f627cb1b25917193a259e49bdad08f671f8d9708acfd5fe0a8c1455d87220" [[package]] name = "pin-project-lite" -version = "0.2.16" +version = "0.2.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3b3cff922bd51709b605d9ead9aa71031d81447142d828eb4a6eba76fe619f9b" +checksum = "a89322df9ebe1c1578d689c92318e070967d1042b512afbe49518723f4e6d5cd" [[package]] name = "pin-utils" @@ -1531,9 +1554,9 @@ dependencies = [ [[package]] name = "potential_utf" -version = "0.1.2" +version = "0.1.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e5a7c30837279ca13e7c867e9e40053bc68740f988cb07f7ca6df43cc734b585" +checksum = "b73949432f5e2a09657003c25bca5e19a0e9c84f8058ca374f49e0ebe605af77" dependencies = [ "zerovec", ] @@ -1544,41 +1567,45 @@ version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "439ee305def115ba05938db6eb1644ff94165c5ab5e9420d1c1bcedbba909391" +[[package]] +name = "prettyplease" +version = "0.2.37" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "479ca8adacdd7ce8f1fb39ce9ecccbfe93a3f1344b3d0d97f20bc0196208f62b" +dependencies = [ + "proc-macro2", + "syn", +] + [[package]] name = "proc-macro2" -version = "1.0.95" +version = "1.0.106" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "02b3e5e68a3a1a02aad3ec490a98007cbc13c37cbe84a3cd7b8e406d76e7f778" +checksum = "8fd00f0bb2e90d81d1044c2b32617f68fcb9fa3bb7640c23e9c748e53fb30934" dependencies = [ "unicode-ident", ] [[package]] name = "quote" -version = "1.0.40" +version = "1.0.45" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1885c039570dc00dcb4ff087a89e185fd56bae234ddc7f056a945bf36467248d" +checksum = "41f2619966050689382d2b44f664f4bc593e129785a36d6ee376ddf37259b924" dependencies = [ "proc-macro2", ] [[package]] name = "r-efi" -version = "5.2.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "74765f6d916ee2faa39bc8e68e4f3ed8949b48cccdac59983d287a7cb71ce9c5" - 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"async-compression", "base64", "bytes", "encoding_rs", "futures-core", - "futures-util", "h2", "http", "http-body", @@ -1667,30 +1697,62 @@ dependencies = [ "hyper-rustls", "hyper-tls", "hyper-util", - "ipnet", "js-sys", "log", "mime", "native-tls", - "once_cell", "percent-encoding", "pin-project-lite", - "rustls-pemfile", + "rustls-pki-types", "serde", "serde_json", "serde_urlencoded", "sync_wrapper", - "system-configuration", "tokio", "tokio-native-tls", - "tokio-util", - "tower 0.5.2", + "tower 0.5.3", + "tower-http 0.6.8", + "tower-service", + "url", + "wasm-bindgen", + "wasm-bindgen-futures", + "web-sys", +] + +[[package]] +name = "reqwest" +version = "0.13.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ab3f43e3283ab1488b624b44b0e988d0acea0b3214e694730a055cb6b2efa801" +dependencies = [ + "base64", + "bytes", + "futures-core", + "http", + "http-body", + "http-body-util", + "hyper", + "hyper-tls", + "hyper-util", + "js-sys", + "log", + "native-tls", + "percent-encoding", + "pin-project-lite", + "rustls-pki-types", + "serde", + "serde_json", + "serde_urlencoded", + "sync_wrapper", + "tokio", + "tokio-native-tls", + "tower 0.5.3", + "tower-http 0.6.8", "tower-service", "url", "wasm-bindgen", "wasm-bindgen-futures", "web-sys", - "windows-registry", ] [[package]] @@ -1701,18 +1763,12 @@ checksum = "a4689e6c2294d81e88dc6261c768b63bc4fcdb852be6d1352498b114f61383b7" dependencies = [ "cc", "cfg-if", - "getrandom 0.2.16", + "getrandom 0.2.17", "libc", "untrusted", "windows-sys 0.52.0", ] -[[package]] -name = "rustc-demangle" -version = "0.1.24" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "719b953e2095829ee67db738b3bfa9fa368c94900df327b3f07fe6e794d2fe1f" - [[package]] name = "rustc_version" version = "0.4.1" @@ -1724,22 +1780,22 @@ dependencies = [ [[package]] name = "rustix" -version = "1.0.7" +version = "1.1.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c71e83d6afe7ff64890ec6b71d6a69bb8a610ab78ce364b3352876bb4c801266" +checksum = "b6fe4565b9518b83ef4f91bb47ce29620ca828bd32cb7e408f0062e9930ba190" dependencies = [ "bitflags", "errno", "libc", "linux-raw-sys", - "windows-sys 0.59.0", + "windows-sys 0.61.2", ] [[package]] name = "rustls" -version = "0.23.27" +version = "0.23.37" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "730944ca083c1c233a75c09f199e973ca499344a2b7ba9e755c457e86fb4a321" +checksum = "758025cb5fccfd3bc2fd74708fd4682be41d99e5dff73c377c0646c6012c73a4" dependencies = [ "once_cell", "rustls-pki-types", @@ -1748,29 +1804,20 @@ dependencies = [ "zeroize", ] -[[package]] -name = "rustls-pemfile" -version = "2.2.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dce314e5fee3f39953d46bb63bb8a46d40c2f8fb7cc5a3b6cab2bde9721d6e50" -dependencies = [ - "rustls-pki-types", -] - [[package]] name = "rustls-pki-types" -version = "1.12.0" +version = "1.14.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "229a4a4c221013e7e1f1a043678c5cc39fe5171437c88fb47151a21e6f5b5c79" +checksum = "be040f8b0a225e40375822a563fa9524378b9d63112f53e19ffff34df5d33fdd" dependencies = [ "zeroize", ] [[package]] name = "rustls-webpki" -version = "0.103.3" +version = "0.103.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e4a72fe2bcf7a6ac6fd7d0b9e5cb68aeb7d4c0a0271730218b3e92d43b4eb435" +checksum = "df33b2b81ac578cabaf06b89b0631153a3f416b0a886e8a7a1707fb51abbd1ef" dependencies = [ "ring", "rustls-pki-types", @@ -1779,33 +1826,24 @@ dependencies = [ [[package]] name = "rustversion" -version = "1.0.20" +version = "1.0.22" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eded382c5f5f786b989652c49544c4877d9f015cc22e145a5ea8ea66c2921cd2" +checksum = "b39cdef0fa800fc44525c84ccb54a029961a8215f9619753635a9c0d2538d46d" [[package]] name = "ryu" -version = "1.0.20" +version = "1.0.23" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "28d3b2b1366ec20994f1fd18c3c594f05c5dd4bc44d8bb0c1c632c8d6829481f" - 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"bitarray", "bytelines", "fa-compression", + "memmap2", "text-compression", ] +[[package]] +name = "sa-server" +version = "0.1.0" +source = "git+https://github.com/unipept/unipept-index.git?branch=feature%2Fspeedup-loading-index#38b45d9c4d2e09603f1f0b914b72a230415f621a" +dependencies = [ + "axum", + "clap", + "sa-index", + "sa-mappings", + "serde", + "tokio", +] + [[package]] name = "same-file" version = "1.0.6" @@ -1836,11 +1887,35 @@ dependencies = [ [[package]] name = "schannel" -version = "0.1.27" +version = "0.1.29" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1f29ebaa345f945cec9fbbc532eb307f0fdad8161f281b6369539c8d84876b3d" +checksum = "91c1b7e4904c873ef0710c1f407dde2e6287de2bebc1bbbf7d430bb7cbffd939" dependencies = [ - "windows-sys 0.59.0", + "windows-sys 0.61.2", +] + +[[package]] +name = "schemars" +version = "0.9.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4cd191f9397d57d581cddd31014772520aa448f65ef991055d7f61582c65165f" +dependencies = [ + "dyn-clone", + "ref-cast", + "serde", + "serde_json", +] + +[[package]] +name = "schemars" +version = "1.2.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a2b42f36aa1cd011945615b92222f6bf73c599a102a300334cd7f8dbeec726cc" +dependencies = [ + "dyn-clone", + "ref-cast", + "serde", + "serde_json", ] [[package]] @@ -1851,12 +1926,12 @@ checksum = "94143f37725109f92c262ed2cf5e59bce7498c01bcc1502d7b9afe439a4e9f49" [[package]] name = "security-framework" -version = "2.11.1" +version = "3.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "897b2245f0b511c87893af39b033e5ca9cce68824c4d7e7630b5a1d339658d02" +checksum = "b7f4bc775c73d9a02cde8bf7b2ec4c9d12743edf609006c7facc23998404cd1d" dependencies = [ "bitflags", - "core-foundation", + "core-foundation 0.10.1", "core-foundation-sys", "libc", "security-framework-sys", @@ -1864,9 +1939,9 @@ dependencies = [ [[package]] name = "security-framework-sys" -version = "2.14.0" +version = "2.17.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "49db231d56a190491cb4aeda9527f1ad45345af50b0851622a7adb8c03b01c32" +checksum = "6ce2691df843ecc5d231c0b14ece2acc3efb62c0a398c7e1d875f3983ce020e3" dependencies = [ "core-foundation-sys", "libc", @@ -1874,24 +1949,34 @@ dependencies = [ [[package]] name = "semver" -version = "1.0.26" +version = "1.0.27" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "56e6fa9c48d24d85fb3de5ad847117517440f6beceb7798af16b4a87d616b8d0" +checksum = "d767eb0aabc880b29956c35734170f26ed551a859dbd361d140cdbeca61ab1e2" [[package]] name = "serde" -version = "1.0.219" +version = "1.0.228" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9a8e94ea7f378bd32cbbd37198a4a91436180c5bb472411e48b5ec2e2124ae9e" +dependencies = [ + "serde_core", + "serde_derive", +] + +[[package]] +name = "serde_core" +version = "1.0.228" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5f0e2c6ed6606019b4e29e69dbaba95b11854410e5347d525002456dbbb786b6" +checksum = "41d385c7d4ca58e59fc732af25c3983b67ac852c1a25000afe1175de458b67ad" dependencies = [ "serde_derive", ] [[package]] name = "serde_derive" -version = "1.0.219" +version = "1.0.228" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5b0276cf7f2c73365f7157c8123c21cd9a50fbbd844757af28ca1f5925fc2a00" +checksum = "d540f220d3187173da220f885ab66608367b6574e925011a9353e4badda91d79" dependencies = [ "proc-macro2", "quote", @@ -1900,24 +1985,26 @@ dependencies = [ [[package]] name = "serde_json" -version = "1.0.140" +version = "1.0.149" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "20068b6e96dc6c9bd23e01df8827e6c7e1f2fddd43c21810382803c136b99373" +checksum = "83fc039473c5595ace860d8c4fafa220ff474b3fc6bfdb4293327f1a37e94d86" dependencies = [ "itoa", "memchr", - "ryu", "serde", + "serde_core", + "zmij", ] [[package]] name = "serde_path_to_error" -version = "0.1.17" +version = "0.1.20" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "59fab13f937fa393d08645bf3a84bdfe86e296747b506ada67bb15f10f218b2a" +checksum = "10a9ff822e371bb5403e391ecd83e182e0e77ba7f6fe0160b795797109d1b457" dependencies = [ "itoa", "serde", + "serde_core", ] [[package]] @@ -1945,17 +2032,18 @@ dependencies = [ [[package]] name = "serde_with" -version = "3.12.0" +version = "3.18.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d6b6f7f2fcb69f747921f79f3926bd1e203fce4fef62c268dd3abfb6d86029aa" +checksum = "dd5414fad8e6907dbdd5bc441a50ae8d6e26151a03b1de04d89a5576de61d01f" dependencies = [ "base64", "chrono", "hex", "indexmap 1.9.3", - "indexmap 2.9.0", - "serde", - "serde_derive", + "indexmap 2.13.0", + "schemars 0.9.0", + "schemars 1.2.1", + "serde_core", "serde_json", "serde_with_macros", "time", @@ -1963,9 +2051,9 @@ dependencies = [ [[package]] name = "serde_with_macros" -version = "3.12.0" +version = "3.18.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8d00caa5193a3c8362ac2b73be6b9e768aa5a4b2f721d8f4b339600c3cb51f8e" +checksum = "d3db8978e608f1fe7357e211969fd9abdcae80bac1ba7a3369bb7eb6b404eb65" dependencies = [ "darling", "proc-macro2", @@ -1990,36 +2078,40 @@ checksum = "0fda2ff0d084019ba4d7c6f371c95d8fd75ce3524c3cb8fb653a3023f6323e64" [[package]] name = "signal-hook-registry" -version = "1.4.5" +version = "1.4.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9203b8055f63a2a00e2f593bb0510367fe707d7ff1e5c872de2f537b339e5410" +checksum = "c4db69cba1110affc0e9f7bcd48bbf87b3f4fc7c61fc9155afd4c469eb3d6c1b" dependencies = [ + "errno", "libc", ] +[[package]] +name = "simd-adler32" +version = "0.3.9" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "703d5c7ef118737c72f1af64ad2f6f8c5e1921f818cdcb97b8fe6fc69bf66214" + [[package]] name = "slab" -version = "0.4.9" +version = "0.4.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8f92a496fb766b417c996b9c5e57daf2f7ad3b0bebe1ccfca4856390e3d3bb67" -dependencies = [ - "autocfg", -] +checksum = "0c790de23124f9ab44544d7ac05d60440adc586479ce501c1d6d7da3cd8c9cf5" [[package]] name = "smallvec" -version = "1.15.0" +version = "1.15.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8917285742e9f3e1683f0a9c4e6b57960b7314d0b08d30d1ecd426713ee2eee9" +checksum = "67b1b7a3b5fe4f1376887184045fcf45c69e92af734b7aaddc05fb777b6fbd03" [[package]] name = "socket2" -version = "0.5.9" +version = "0.6.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4f5fd57c80058a56cf5c777ab8a126398ece8e442983605d280a44ce79d0edef" +checksum = "3a766e1110788c36f4fa1c2b71b387a7815aa65f88ce0229841826633d93723e" dependencies = [ "libc", - "windows-sys 0.52.0", + "windows-sys 0.61.2", ] [[package]] @@ -2030,9 +2122,9 @@ checksum = "6980e8d7511241f8acf4aebddbb1ff938df5eebe98691418c4468d0b72a96a67" [[package]] name = "stable_deref_trait" -version = "1.2.0" +version = "1.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a8f112729512f8e442d81f95a8a7ddf2b7c6b8a1a6f509a95864142b30cab2d3" +checksum = "6ce2be8dc25455e1f91df71bfa12ad37d7af1092ae736f3a6cd0e37bc7810596" [[package]] name = "strsim" @@ -2058,9 +2150,9 @@ dependencies = [ [[package]] name = "syn" -version = "2.0.101" +version = "2.0.117" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8ce2b7fc941b3a24138a0a7cf8e858bfc6a992e7978a068a5c760deb0ed43caf" +checksum = "e665b8803e7b1d2a727f4023456bbbbe74da67099c585258af0ad9c5013b9b99" dependencies = [ "proc-macro2", "quote", @@ -2089,12 +2181,12 @@ dependencies = [ [[package]] name = "system-configuration" -version = "0.6.1" +version = "0.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3c879d448e9d986b661742763247d3693ed13609438cf3d006f51f5368a5ba6b" +checksum = "a13f3d0daba03132c0aa9767f98351b3488edc2c100cda2d2ec2b04f3d8d3c8b" dependencies = [ "bitflags", - "core-foundation", + "core-foundation 0.9.4", "system-configuration-sys", ] @@ -2108,31 +2200,26 @@ dependencies = [ "libc", ] -[[package]] -name = "tap" -version = "1.0.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "55937e1799185b12863d447f42597ed69d9928686b8d88a1df17376a097d8369" - [[package]] name = "tempfile" -version = "3.20.0" +version = "3.27.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e8a64e3985349f2441a1a9ef0b853f869006c3855f2cda6862a94d26ebb9d6a1" +checksum = "32497e9a4c7b38532efcdebeef879707aa9f794296a4f0244f6f69e9bc8574bd" dependencies = [ "fastrand", - "getrandom 0.3.3", + "getrandom 0.4.2", "once_cell", "rustix", - "windows-sys 0.59.0", + "windows-sys 0.61.2", ] [[package]] name = "text-compression" version = "0.1.0" -source = "git+https://github.com/unipept/unipept-index.git#fbc93285e334ef62f6697406cb621d14b32d1903" +source = "git+https://github.com/unipept/unipept-index.git?branch=feature%2Fspeedup-loading-index#38b45d9c4d2e09603f1f0b914b72a230415f621a" dependencies = [ "bitarray", + "memmap2", ] [[package]] @@ -2157,40 +2244,39 @@ dependencies = [ [[package]] name = "thread_local" -version = "1.1.8" +version = "1.1.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8b9ef9bad013ada3808854ceac7b46812a6465ba368859a37e2100283d2d719c" +checksum = "f60246a4944f24f6e018aa17cdeffb7818b76356965d03b07d6a9886e8962185" dependencies = [ "cfg-if", - "once_cell", ] [[package]] name = "time" -version = "0.3.41" +version = "0.3.47" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8a7619e19bc266e0f9c5e6686659d394bc57973859340060a69221e57dbc0c40" +checksum = "743bd48c283afc0388f9b8827b976905fb217ad9e647fae3a379a9283c4def2c" dependencies = [ "deranged", "itoa", "num-conv", "powerfmt", - "serde", + "serde_core", "time-core", "time-macros", ] [[package]] name = "time-core" -version = "0.1.4" +version = "0.1.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c9e9a38711f559d9e3ce1cdb06dd7c5b8ea546bc90052da6d06bb76da74bb07c" +checksum = "7694e1cfe791f8d31026952abf09c69ca6f6fa4e1a1229e18988f06a04a12dca" [[package]] name = "time-macros" -version = "0.2.22" +version = "0.2.27" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3526739392ec93fd8b359c8e98514cb3e8e021beb4e5f597b00a0221f8ed8a49" +checksum = "2e70e4c5a0e0a8a4823ad65dfe1a6930e4f4d756dcd9dd7939022b5e8c501215" dependencies = [ "num-conv", "time-core", @@ -2198,9 +2284,9 @@ dependencies = [ [[package]] name = "tinystr" -version = "0.8.1" +version = "0.8.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5d4f6d1145dcb577acf783d4e601bc1d76a13337bb54e6233add580b07344c8b" +checksum = "42d3e9c45c09de15d06dd8acf5f4e0e399e85927b7f00711024eb7ae10fa4869" dependencies = [ "displaydoc", "zerovec", @@ -2218,11 +2304,10 @@ dependencies = [ [[package]] name = "tokio" -version = "1.45.0" +version = "1.50.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2513ca694ef9ede0fb23fe71a4ee4107cb102b9dc1930f6d0fd77aae068ae165" +checksum = "27ad5e34374e03cfffefc301becb44e9dc3c17584f414349ebe29ed26661822d" dependencies = [ - "backtrace", "bytes", "libc", "mio", @@ -2231,14 +2316,14 @@ dependencies = [ "signal-hook-registry", "socket2", "tokio-macros", - "windows-sys 0.52.0", + "windows-sys 0.61.2", ] [[package]] name = "tokio-macros" -version = "2.5.0" +version = "2.6.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6e06d43f1345a3bcd39f6a56dbb7dcab2ba47e68e8ac134855e7e2bdbaf8cab8" +checksum = "5c55a2eff8b69ce66c84f85e1da1c233edc36ceb85a2058d11b0d6a3c7e7569c" dependencies = [ "proc-macro2", "quote", @@ -2257,9 +2342,9 @@ dependencies = [ [[package]] name = "tokio-rustls" -version = "0.26.2" +version = "0.26.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8e727b36a1a0e8b74c376ac2211e40c2c8af09fb4013c60d910495810f008e9b" +checksum = "1729aa945f29d91ba541258c8df89027d5792d85a8841fb65e8bf0f4ede4ef61" dependencies = [ "rustls", "tokio", @@ -2267,9 +2352,9 @@ dependencies = [ [[package]] name = "tokio-util" -version = "0.7.15" +version = "0.7.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "66a539a9ad6d5d281510d5bd368c973d636c02dbf8a67300bfb6b950696ad7df" +checksum = "9ae9cec805b01e8fc3fd2fe289f89149a9b66dd16786abd8b19cfa7b48cb0098" dependencies = [ "bytes", "futures-core", @@ -2291,9 +2376,9 @@ dependencies = [ [[package]] name = "tower" -version = "0.5.2" +version = "0.5.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d039ad9159c98b70ecfd540b2573b97f7f52c3e8d9f8ad57a24b916a536975f9" +checksum = "ebe5ef63511595f1344e2d5cfa636d973292adc0eec1f0ad45fae9f0851ab1d4" dependencies = [ "futures-core", "futures-util", @@ -2322,6 +2407,29 @@ dependencies = [ "tracing", ] +[[package]] +name = "tower-http" +version = "0.6.8" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d4e6559d53cc268e5031cd8429d05415bc4cb4aefc4aa5d6cc35fbf5b924a1f8" +dependencies = [ + "async-compression", + "bitflags", + "bytes", + "futures-core", + "futures-util", + "http", + "http-body", + "http-body-util", + "iri-string", + "pin-project-lite", + "tokio", + "tokio-util", + "tower 0.5.3", + "tower-layer", + "tower-service", +] + [[package]] name = "tower-layer" version = "0.3.3" @@ -2336,9 +2444,9 @@ checksum = "8df9b6e13f2d32c91b9bd719c00d1958837bc7dec474d94952798cc8e69eeec3" [[package]] name = "tracing" -version = "0.1.41" +version = "0.1.44" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "784e0ac535deb450455cbfa28a6f0df145ea1bb7ae51b821cf5e7927fdcfbdd0" +checksum = "63e71662fa4b2a2c3a26f570f037eb95bb1f85397f3cd8076caed2f026a6d100" dependencies = [ "log", "pin-project-lite", @@ -2348,9 +2456,9 @@ dependencies = [ [[package]] name = "tracing-attributes" -version = "0.1.28" +version = "0.1.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "395ae124c09f9e6918a2310af6038fba074bcf474ac352496d5910dd59a2226d" +checksum = "7490cfa5ec963746568740651ac6781f701c9c5ea257c58e057f3ba8cf69e8da" dependencies = [ "proc-macro2", "quote", @@ -2359,9 +2467,9 @@ dependencies = [ [[package]] name = "tracing-core" -version = "0.1.33" +version = "0.1.36" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e672c95779cf947c5311f83787af4fa8fffd12fb27e4993211a84bdfd9610f9c" +checksum = "db97caf9d906fbde555dd62fa95ddba9eecfd14cb388e4f491a66d74cd5fb79a" dependencies = [ "once_cell", "valuable", @@ -2380,14 +2488,14 @@ dependencies = [ [[package]] name = "tracing-subscriber" -version = "0.3.19" +version = "0.3.23" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e8189decb5ac0fa7bc8b96b7cb9b2701d60d48805aca84a238004d665fcc4008" +checksum = "cb7f578e5945fb242538965c2d0b04418d38ec25c79d160cd279bf0731c8d319" dependencies = [ "matchers", "nu-ansi-term", "once_cell", - "regex", + "regex-automata", "sharded-slab", "smallvec", "thread_local", @@ -2404,15 +2512,21 @@ checksum = "e421abadd41a4225275504ea4d6566923418b7f05506fbc9c0fe86ba7396114b" [[package]] name = "unicase" -version = "2.8.1" +version = "2.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "75b844d17643ee918803943289730bec8aac480150456169e647ed0b576ba539" +checksum = "dbc4bc3a9f746d862c45cb89d705aa10f187bb96c76001afab07a0d35ce60142" [[package]] name = "unicode-ident" -version = "1.0.18" +version = "1.0.24" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e6e4313cd5fcd3dad5cafa179702e2b244f760991f45397d14d4ebf38247da75" + +[[package]] +name = "unicode-xid" +version = "0.2.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5a5f39404a5da50712a4c1eecf25e90dd62b613502b7e925fd4e4d19b5c96512" +checksum = "ebc1c04c71510c7f702b52b7c350734c9ff1295c464a03335b00bb84fc54f853" [[package]] name = "unipept-api" @@ -2429,14 +2543,14 @@ dependencies = [ "index", "itertools 0.13.0", "paste", - 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"serde", "stable_deref_trait", "yoke-derive", "zerofrom", @@ -2912,9 +3028,9 @@ dependencies = [ [[package]] name = "yoke-derive" -version = "0.8.0" +version = "0.8.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "38da3c9736e16c5d3c8c597a9aaa5d1fa565d0532ae05e27c24aa62fb32c0ab6" +checksum = "b659052874eb698efe5b9e8cf382204678a0086ebf46982b79d6ca3182927e5d" dependencies = [ "proc-macro2", "quote", @@ -2922,6 +3038,26 @@ dependencies = [ "synstructure", ] +[[package]] +name = "zerocopy" +version = "0.8.48" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "eed437bf9d6692032087e337407a86f04cd8d6a16a37199ed57949d415bd68e9" +dependencies = [ + "zerocopy-derive", +] + +[[package]] +name = "zerocopy-derive" +version = "0.8.48" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "70e3cd084b1788766f53af483dd21f93881ff30d7320490ec3ef7526d203bad4" +dependencies = [ + "proc-macro2", + "quote", + "syn", +] + [[package]] name = "zerofrom" version = "0.1.6" @@ -2945,15 +3081,15 @@ dependencies = [ [[package]] name = "zeroize" -version = "1.8.1" +version = "1.8.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ced3678a2879b30306d323f4542626697a464a97c0a07c9aebf7ebca65cd4dde" +checksum = "b97154e67e32c85465826e8bcc1c59429aaaf107c1e4a9e53c8d8ccd5eff88d0" [[package]] name = "zerotrie" -version = "0.2.2" +version = "0.2.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "36f0bbd478583f79edad978b407914f61b2972f5af6fa089686016be8f9af595" +checksum = "2a59c17a5562d507e4b54960e8569ebee33bee890c70aa3fe7b97e85a9fd7851" dependencies = [ "displaydoc", "yoke", @@ -2962,9 +3098,9 @@ dependencies = [ [[package]] name = "zerovec" -version = "0.11.2" +version = "0.11.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4a05eb080e015ba39cc9e23bbe5e7fb04d5fb040350f99f34e338d5fdd294428" +checksum = "6c28719294829477f525be0186d13efa9a3c602f7ec202ca9e353d310fb9a002" dependencies = [ "yoke", "zerofrom", @@ -2973,11 +3109,17 @@ dependencies = [ [[package]] name = "zerovec-derive" -version = "0.11.1" +version = "0.11.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5b96237efa0c878c64bd89c436f661be4e46b2f3eff1ebb976f7ef2321d2f58f" +checksum = "eadce39539ca5cb3985590102671f2567e659fca9666581ad3411d59207951f3" dependencies = [ "proc-macro2", "quote", "syn", ] + +[[package]] +name = "zmij" +version = "1.0.21" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b8848ee67ecc8aedbaf3e4122217aff892639231befc6a1b58d29fff4c2cabaa" diff --git a/api/src/lib.rs b/api/src/lib.rs index fa76366..21f0250 100644 --- a/api/src/lib.rs +++ b/api/src/lib.rs @@ -21,7 +21,7 @@ pub struct AppState { pub database: Arc, pub index: Arc } -pub async fn start(index_location: &str, database_address: &str, port: u32) -> Result<(), errors::AppError> { +pub async fn start(index_location: &str, database_address: &str, port: u32, use_mmap: bool) -> Result<(), errors::AppError> { let version = format!("{}/.version", index_location); let sampledata = format!("{}/datastore/sampledata.json", index_location); @@ -33,7 +33,8 @@ pub async fn start(index_location: &str, database_address: &str, port: u32) -> R let taxons = format!("{}/datastore/taxons.tsv", index_location); let sa = format!("{}/sa.bin", index_location); - let proteins = format!("{}/proteins.tsv", index_location); + let proteins = format!("{}/proteins.bin", index_location); + let mappings = format!("{}/mapping.bin", index_location); let database = Database::try_from_url(database_address)?; @@ -48,7 +49,7 @@ pub async fn start(index_location: &str, database_address: &str, port: u32) -> R &taxons )?; - let index = Index::try_from_files(&sa, &proteins)?; + let index = Index::try_from_files(&sa, &proteins, &mappings, use_mmap)?; let app_state = AppState { datastore: Arc::new(datastore), diff --git a/api/src/main.rs b/api/src/main.rs index 3fcf090..b2c4f21 100644 --- a/api/src/main.rs +++ b/api/src/main.rs @@ -8,14 +8,16 @@ pub struct Arguments { #[arg(short, long)] database_address: String, #[arg(short, long)] - port: u32 + port: u32, + #[arg(short, long, default_value_t = false)] + mmap: bool } #[tokio::main] async fn main() { let args = Arguments::parse(); - if let Err(e) = start(&args.index_location, &args.database_address, args.port).await { + if let Err(e) = start(&args.index_location, &args.database_address, args.port, args.mmap).await { eprintln!("{}", e); std::process::exit(1); } diff --git a/api/src/routes.rs b/api/src/routes.rs index aa10bf4..2f2a675 100644 --- a/api/src/routes.rs +++ b/api/src/routes.rs @@ -63,8 +63,6 @@ macro_rules! define_routes { }}; } -pub(crate) use define_routes; - fn create_api_v2_routes() -> Router { define_routes!( "/pept2ec", diff --git a/index/Cargo.toml b/index/Cargo.toml index 10ae020..1d75aa4 100644 --- a/index/Cargo.toml +++ b/index/Cargo.toml @@ -4,7 +4,6 @@ version = "2.3.2" edition = "2021" [dependencies] -sa-compression = { git = "https://github.com/unipept/unipept-index.git" } -sa-index = { git = "https://github.com/unipept/unipept-index.git" } -sa-mappings = { git = "https://github.com/unipept/unipept-index.git" } +sa-server = { git = "https://github.com/unipept/unipept-index.git", branch = "feature/speedup-loading-index" } +sa-index = { git = "https://github.com/unipept/unipept-index.git", branch = "feature/speedup-loading-index" } thiserror = "1.0" diff --git a/index/src/errors.rs b/index/src/errors.rs index 17802c3..c5b274c 100644 --- a/index/src/errors.rs +++ b/index/src/errors.rs @@ -18,6 +18,8 @@ pub enum LoadIndexError { LoadSuffixArrayError(String), #[error("Error while loading proteins: {0}")] LoadProteinsErrors(String), + #[error("Error while loading mapping: {0}")] + LoadMappingError(String), #[error("Error while loading taxonomy: {0}")] LoadTaxonomyError(String) } diff --git a/index/src/lib.rs b/index/src/lib.rs index 99892f0..54246e4 100644 --- a/index/src/lib.rs +++ b/index/src/lib.rs @@ -1,68 +1,38 @@ -use std::{ - fs::File, - io::{BufReader, Read} -}; - pub use errors::IndexError; use errors::LoadIndexError; -use sa_compression::load_compressed_suffix_array; +use sa_server::{load_mapping_file, load_proteins_file, load_suffix_array_file}; pub use sa_index::peptide_search::ProteinInfo; pub use sa_index::peptide_search::SearchResult; use sa_index::{ - binary::load_suffix_array, peptide_search::{search_all_peptides}, - sa_searcher::BitVecSearcher, - SuffixArray }; -use sa_mappings::proteins::Proteins; +use sa_index::sa_searcher::Searcher; +use sa_index::suffix_to_protein_index::SuffixToProteinMapping; mod errors; pub struct Index { - searcher: BitVecSearcher + searcher: Searcher } impl Index { - pub fn try_from_files(index_file: &str, proteins_file: &str) -> Result { - - let proteins = Proteins::try_from_database_file(proteins_file) - .map_err(|_| LoadIndexError::LoadProteinsErrors( - LoadIndexError::FileNotFound(proteins_file.to_string()).to_string(), - ))?; + pub fn try_from_files(index_file: &str, proteins_file: &str, mapping_file: &str, use_mmap: bool) -> Result { + eprintln!("Loading proteins from file: {}", proteins_file); + let proteins = + load_proteins_file(proteins_file, use_mmap).map_err(|err| LoadIndexError::LoadProteinsErrors(err.to_string()))?; + eprintln!("Loading suffix array from file: {}", index_file); let suffix_array = - load_index_file(index_file).map_err(|err| LoadIndexError::LoadSuffixArrayError(err.to_string()))?; + load_suffix_array_file(index_file, use_mmap).map_err(|err| LoadIndexError::LoadSuffixArrayError(err.to_string()))?; - let searcher = BitVecSearcher::new(suffix_array, proteins); + eprintln!("Loading searcher from file: {}", mapping_file); + let SuffixToProteinMapping(suffix_to_protein_index) = + load_mapping_file(mapping_file, use_mmap).map_err(|err| LoadIndexError::LoadMappingError(err.to_string()))?; - Ok(Self { searcher }) + Ok(Self { searcher: Searcher::new(suffix_array, proteins, suffix_to_protein_index) }) } pub fn analyse(&self, peptides: &Vec, equate_il: bool, tryptic: bool, cutoff: Option) -> Vec { search_all_peptides(&self.searcher, peptides, cutoff.unwrap_or(10_000), equate_il, tryptic) } } - -fn load_index_file(index_file: &str) -> Result { - // Open the suffix array file - let mut sa_file = File::open(index_file).map_err( - |_| LoadIndexError::FileNotFound(index_file.to_string()) - )?; - - // Create a buffer reader for the file - let mut reader = BufReader::new(&mut sa_file); - - // Read the bits per value from the binary file (1 byte) - let mut bits_per_value_buffer = [0_u8; 1]; - reader.read_exact(&mut bits_per_value_buffer).map_err(|_| { - LoadIndexError::LoadSuffixArrayError("Could not read the flags from the binary file".to_string()) - })?; - let bits_per_value = bits_per_value_buffer[0]; - - if bits_per_value == 64 { - Ok(load_suffix_array(&mut reader).map_err(|err| LoadIndexError::LoadSuffixArrayError(err.to_string()))?) - } else { - Ok(load_compressed_suffix_array(&mut reader, bits_per_value as usize) - .map_err(|err| LoadIndexError::LoadSuffixArrayError(err.to_string()))?) - } -}