diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index f36a8b1cec..f5660a3d42 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -16,7 +16,7 @@ jobs: env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 - name: Install libgeos on Linux if: runner.os == 'Linux' @@ -26,7 +26,7 @@ jobs: with: working-directory: "apis/r" - - uses: r-lib/actions/setup-r@v1 + - uses: r-lib/actions/setup-r@v2 with: use-public-rspm: true working-directory: "apis/r" diff --git a/.github/workflows/r-cmd-check.yaml b/.github/workflows/r-cmd-check.yaml index c7fd13b623..736325386c 100644 --- a/.github/workflows/r-cmd-check.yaml +++ b/.github/workflows/r-cmd-check.yaml @@ -31,7 +31,7 @@ jobs: _R_CHECK_FORCE_SUGGESTS_: false steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v3 - name: Install libgeos on Linux if: runner.os == 'Linux' @@ -39,7 +39,7 @@ jobs: - uses: r-lib/actions/setup-pandoc@v1 - - uses: r-lib/actions/setup-r@v1 + - uses: r-lib/actions/setup-r@v2 with: r-version: ${{ matrix.config.r }} http-user-agent: ${{ matrix.config.http-user-agent }} diff --git a/apis/r/DESCRIPTION b/apis/r/DESCRIPTION index a9f02e949c..905ddb7c91 100644 --- a/apis/r/DESCRIPTION +++ b/apis/r/DESCRIPTION @@ -7,7 +7,7 @@ Description: Interface for working with 'TileDB'-based Stack of Matrices, from and export to in-memory formats used by popular toolchains like 'Seurat', 'Bioconductor', and even 'AnnData' using the companion Python package. -Version: 0.1.16.9001 +Version: 0.1.19 Authors@R: c( person(given = "Aaron", family = "Wolen", diff --git a/apis/r/NEWS.md b/apis/r/NEWS.md index dcd350f1e3..13a4a68544 100644 --- a/apis/r/NEWS.md +++ b/apis/r/NEWS.md @@ -1,11 +1,22 @@ -# tiledbsoma (development version) +# tiledbsoma 0.1.19 + +## Changes + +- Updated `setup-r` GitHub Action to v2 and `checkout` to v3 + +# tiledbsoma 0.1.18 ## Features - The `AnnotationMatrix`'s `to_matrix()` method now supports batched reads via the `batch_mode` argument. This functionality can also be leveraged from `SOMA`'s `get_seurat_dimreductions_list()` and `get_seurat_dimreduction()` methods. +## Changes + +- Decreased capacity of `AssayMatrix` arrays from 100,000 to 1,000 to improve remote-read performance (#543) + ## Fixes -* Don't use default assay name when recreating a `Seurat` object (thanks @dan11mcguire) + +- Don't use default assay name when recreating a `Seurat` object (thanks @dan11mcguire) # tiledbsoma 0.1.12