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add per-method description and timeout to shell commands #2814

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Run time

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Job	Run time
pytest-matrix (ubuntu-24.04, 3.12)	6m 8s
pytest-matrix (ubuntu-24.04, 3.13)	7m 49s
pytest-matrix (ubuntu-24.04, 3.11)	6m 56s
pytest-matrix (macos-15, 3.12)	12m 18s
pytest-matrix (macos-15, 3.11)	12m 7s
pytest-matrix (macos-15, 3.13)	4m 50s
pytest	3s
	50m 11s