RandomForest/paramgroups.json at develop · genepattern/RandomForest · GitHub

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[
    {
        "name": "Inputs (for cross-validation, only use 'Training Data'):",
        "description": "To perform cross-validation, only provide the data and class files in 'Training Data.' Otherwise, for test-train prediction, provide inputs in both 'Training Data' (or 'Model Input') and 'Testing Data.'",
        "hidden": false
    },
    {
        "name": "Inputs (for cross-validation, only use 'Training Data'):/Training Data",
        "description": "Provide data (feature) and class (target) files for training dataset.",
        "hidden": false,
        "parameters": [
            "train.data.file",
            "train.class.file",
            "model.output",
            "model.output.filename"
        ]
    },
    {
        "name": "Inputs (for cross-validation, only use 'Training Data'):/Model Input",
        "description": "Provide model input as pickle file (takes priority over Training Data if both are provided).",
        "hidden": true,
        "parameters": [
            "model.input.file"
        ]
    },
    {
        "name": "Inputs (for cross-validation, only use 'Training Data'):/Testing Data",
        "description": "Provide data (feature) and class (target) files for test dataset (only needed for test-train prediction, not cross-validation).",
        "hidden": false,
        "parameters": [
            "test.data.file",
            "test.class.file"
        ]
    },
    {
        "name": "Inputs (for cross-validation, only use 'Training Data'):/Result Filenames",
        "description": "Provide result filenames. Default is to use training data base filename.",
        "hidden": true,
        "parameters": [
            "prediction.results.filename",
            "feature.importance.filename"
        ]
    },
    {
        "name": "Optional Classifier Parameters:",
        "description": "The following parameters for classifier specifications are optional as default values are passed in. For details, please refer to <a href=https://scikit-learn.org/stable/modules/generated/sklearn.ensemble.RandomForestClassifier.html>this</a>",
        "hidden": true,
        "parameters": [
            "bootstrap",
            "ccp_alpha",
            "class_weight",
            "criterion",
            "max_depth",
            "max_features",
            "max_leaf_nodes",
            "max_samples",
            "min_impurity_decrease",
            "min_samples_leaf",
            "min_samples_split",
            "min_weight_fraction_leaf",
            "n_estimators",
            "random_state"
        ]
    },
    {
        "name": "Error Reporting:",
        "description": "Contains developer debugging parameter.",
        "hidden": true,
        "parameters": [
            "debug",
            "verbose"
        ]
    }
]