diff --git a/README.md b/README.md index 0fb9e48..d61e1e6 100644 --- a/README.md +++ b/README.md @@ -244,22 +244,19 @@ Check crates/capi/ggcat-cpp-api/example for usage examples. If you use GGCAT in your research, please cite the following article: -### [GGCAT](https://doi.org/10.1101/2022.10.24.513174) +### [GGCAT](https://doi.org/10.1101/gr.277615.122) +> _Extremely-fast construction and querying of compacted and colored de Bruijn graphs with GGCAT_ +> Andrea Cracco, Alexandru I. Tomescu +> **Genome Research** 33, 1198--1207 (2023), DOI: [10.1101/gr.277615.122](https://doi.org/10.1101/gr.277615.122) -> Extremely-fast construction and querying of compacted and colored de Bruijn graphs with GGCAT -> Andrea Cracco, Alexandru I. Tomescu -> Genome Research gr.277615.122; doi: https://doi.org/10.1101/gr.277615.122 - -If you use a matchtigs/eulertigs output, please also cite the following articles: +If you use a matchtigs/eulertigs output, please also cite the following articles: #### [Matchtigs](https://doi.org/10.1101/2021.12.15.472871) - -> Matchtigs: minimum plain text representation of kmer sets -> Sebastian Schmidt, Shahbaz Khan, Jarno Alanko, Alexandru I. Tomescu -> bioRxiv 2021.12.15.472871; doi: https://doi.org/10.1101/2021.12.15.472871 - -#### [Eulertigs](https://doi.org/10.4230/LIPIcs.WABI.2022.2) - -> Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time -> Sebastian Schmidt and Jarno N. Alanko -> WABI 2022. [10.4230/LIPIcs.WABI.2022.2](https://doi.org/10.4230/LIPIcs.WABI.2022.2). +> _Matchtigs: minimum plain text representation of kmer sets_ +> Sebastian Schmidt, Shahbaz Khan, Jarno N. Alanko, Giulio E. Pibiri & Alexandru I. Tomescu +> **Genome Biology**, Volume 24, article number 136 (2023), DOI: [10.1101/2021.12.15.472871](https://doi.org/10.1101/2021.12.15.472871) + +#### [Eulertigs](https://doi.org/10.1186/s13015-023-00227-1) +> _Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time_ +> Sebastian Schmidt and Jarno N. Alanko +> **Algorithms for Molecular Biology**, Volume 18, article number 5 (2023), DOI: [10.1186/s13015-023-00227-1](https://doi.org/10.1186/s13015-023-00227-1).